Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2625

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2624: 10992 - SUPERFAMILY--SSF52058, at 616981 to 618073 10992 mRNA_2625: 10993 - K20784 XEG113 arabinosyltransferase, at 618435 to 621494 10993 mRNA_2626: 10994 - Interpro GDP-fucose protein O-fucosyltransferase, at 621778 to 623321 10994

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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617,504 + 10992 mRNA_2624 0.48 0.4
617,505 - 10992 mRNA_2624 0.48 -0.4
617,645 - 10992 mRNA_2624 0.61 1.2
617,725 - 10992 mRNA_2624 0.68 1.1
617,726 + 10992 mRNA_2624 0.68 0.0
617,738 + 10992 mRNA_2624 0.69 0.2
617,751 - 10992 mRNA_2624 0.70 0.6
617,759 - 10992 mRNA_2624 0.71 -0.2
617,760 - 10992 mRNA_2624 0.71 0.9
617,762 + 10992 mRNA_2624 0.71 -1.1
617,770 + 10992 mRNA_2624 0.72 0.5
617,771 + 10992 mRNA_2624 0.72 -0.4
617,771 + 10992 mRNA_2624 0.72 1.6
617,780 - 10992 mRNA_2624 0.73 -0.2
617,784 + 10992 mRNA_2624 0.73 -0.9
617,786 - 10992 mRNA_2624 0.74 0.8
617,788 - 10992 mRNA_2624 0.74 2.2
617,805 - 10992 mRNA_2624 0.75 0.9
617,826 + 10992 mRNA_2624 0.77 0.4
617,844 - 10992 mRNA_2624 0.79 1.6
617,847 + 10992 mRNA_2624 0.79 -0.2
617,884 + 10992 mRNA_2624 0.83 1.0
617,885 - 10992 mRNA_2624 0.83 1.2
617,911 - 10992 mRNA_2624 0.85 1.4
617,914 + 10992 mRNA_2624 0.85 -0.8
617,932 - 10992 mRNA_2624 0.87 -0.0
617,936 - 10992 mRNA_2624 0.87 0.6
617,964 + 2.1
617,976 + 0.6
617,976 - -0.3
617,980 + 0.2
617,988 - -1.2
617,988 - 0.0
618,008 + 1.1
618,043 + 1.0
618,069 + 0.5
618,083 + 0.4
618,084 - 2.1
618,137 - 0.9
618,140 + 0.4
618,143 + 0.2
618,187 + -0.3
618,191 - 1.0
618,193 - -0.1
618,197 - -0.3
618,203 - 0.8
618,224 + -0.5
618,245 - -1.0
618,246 - -1.2
618,246 + 3.0
618,251 + 0.3
618,257 - -0.0
618,267 - 0.1
618,268 - -1.2
618,270 - 1.5
618,276 + -0.6
618,278 - 0.6
618,281 - 0.3
618,291 - -0.3
618,296 - 0.5
618,297 + 2.7
618,297 - -0.2
618,308 - -0.4
618,313 + 0.7
618,313 + -0.1
618,314 + -0.9
618,315 - 1.5
618,316 - 0.6
618,317 + 0.3
618,319 - -1.0
618,319 + 0.9
618,319 + -0.1
618,320 + 0.9
618,326 + 1.2
618,327 - 1.2
618,334 + -0.0
618,401 - 0.1
618,410 + -1.1
618,478 + -0.0
618,483 - 0.5
618,503 + 0.6
618,519 + 0.2
618,547 + 0.1
618,623 + 0.5
618,624 - 0.1
618,630 - -0.6
618,640 + 0.2
618,650 - 0.0
618,782 + 10993 mRNA_2625 0.11 0.9
618,795 + 10993 mRNA_2625 0.12 -0.2
618,798 + 10993 mRNA_2625 0.12 0.1
618,921 + 10993 mRNA_2625 0.16 -0.9
619,225 + 10993 mRNA_2625 0.26 -0.6
619,356 - 10993 mRNA_2625 0.30 -0.2
619,496 + 10993 mRNA_2625 0.35 1.6
619,693 - 10993 mRNA_2625 0.41 1.8
620,106 + 10993 mRNA_2625 0.55 -0.8
620,243 - 10993 mRNA_2625 0.59 0.2
620,248 + 10993 mRNA_2625 0.59 0.1
620,405 + 10993 mRNA_2625 0.64 -2.0
620,530 - 10993 mRNA_2625 0.68 -0.5
620,547 + 10993 mRNA_2625 0.69 1.0
620,667 - 10993 mRNA_2625 0.73 0.5
620,813 - 10993 mRNA_2625 0.78 -0.6
620,819 - 10993 mRNA_2625 0.78 -0.7
620,851 + 10993 mRNA_2625 0.79 0.7
620,975 + 10993 mRNA_2625 0.83 0.1
621,110 - 10993 mRNA_2625 0.87 -0.3
621,138 + 10993 mRNA_2625 0.88 0.2
621,400 + -1.1
621,415 - -0.8
621,513 - -0.4
621,721 - -0.0
621,833 - 1.6
622,121 - 10994 mRNA_2626 0.22 -1.0
622,171 + 10994 mRNA_2626 0.25 -0.1
622,176 - 10994 mRNA_2626 0.26 1.2
622,302 + 10994 mRNA_2626 0.34 -1.0
622,347 + 10994 mRNA_2626 0.37 -0.8
622,385 + 10994 mRNA_2626 0.39 1.7
622,453 + 10994 mRNA_2626 0.44 -0.1