Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2620

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2619: 10987 - Hypothetical Protein, at 608244 to 608759 10987 mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609303 to 611052 10988 mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611391 to 613373 10989

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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608,388 + 10987 mRNA_2619 0.28 0.8
608,396 - 10987 mRNA_2619 0.29 -1.1
608,484 - 10987 mRNA_2619 0.47 -0.2
608,486 - 10987 mRNA_2619 0.47 0.3
608,486 + 10987 mRNA_2619 0.47 1.3
608,511 - 10987 mRNA_2619 0.52 0.9
608,516 - 10987 mRNA_2619 0.53 -0.0
608,655 - 10987 mRNA_2619 0.80 1.8
608,658 - 10987 mRNA_2619 0.80 2.0
608,663 - 10987 mRNA_2619 0.81 0.9
608,673 + 10987 mRNA_2619 0.83 0.9
608,688 - 10987 mRNA_2619 0.86 -0.1
608,787 + -0.7
608,794 - 0.9
608,795 + 0.5
608,804 - 1.2
608,819 + -0.8
608,837 - 0.3
608,913 + 0.4
608,936 - 2.0
608,942 - 0.3
608,945 - 1.3
608,946 - 1.7
608,947 + 0.1
608,950 - -0.2
608,952 - -0.7
608,953 - -0.1
608,953 + -0.1
608,954 - 0.5
608,958 - 0.7
608,968 + 0.9
609,004 + 0.1
609,014 + -0.0
609,030 + 0.1
609,031 + 1.6
609,069 + 0.5
609,073 + -0.2
609,109 + -0.4
609,209 + 1.3
609,213 - -0.6
609,240 + -1.4
609,250 + 1.6
609,253 + 2.1
609,257 + 0.5
609,263 - -0.5
609,265 - -1.3
609,276 + -0.3
609,366 + 0.7
609,367 - -0.6
609,371 - 0.1
609,379 + 0.2
609,380 - -0.5
609,380 - 1.4
609,382 + -0.0
609,384 - -0.3
609,385 + 1.0
609,399 - 0.3
609,405 - -0.0
609,407 - 0.1
609,416 + 1.0
609,416 - -1.0
609,448 + 2.3
609,526 - 10988 mRNA_2620 0.13 0.2
609,528 + 10988 mRNA_2620 0.13 0.4
609,537 - 10988 mRNA_2620 0.13 0.9
609,540 + 10988 mRNA_2620 0.14 1.1
609,546 - 10988 mRNA_2620 0.14 -1.8
609,548 + 10988 mRNA_2620 0.14 0.9
609,548 - 10988 mRNA_2620 0.14 0.7
609,550 + 10988 mRNA_2620 0.14 0.1
609,562 + 10988 mRNA_2620 0.15 1.4
609,562 + 10988 mRNA_2620 0.15 -0.1
609,563 + 10988 mRNA_2620 0.15 0.1
609,565 + 10988 mRNA_2620 0.15 0.2
609,567 + 10988 mRNA_2620 0.15 -0.0
609,573 - 10988 mRNA_2620 0.15 1.7
609,577 + 10988 mRNA_2620 0.16 1.4
609,593 + 10988 mRNA_2620 0.17 0.4
609,679 + 10988 mRNA_2620 0.21 0.9
609,688 - 10988 mRNA_2620 0.22 0.4
609,691 + 10988 mRNA_2620 0.22 3.8
609,694 + 10988 mRNA_2620 0.22 0.1
609,701 - 10988 mRNA_2620 0.23 -0.4
609,704 - 10988 mRNA_2620 0.23 0.7
609,721 - 10988 mRNA_2620 0.24 1.2
609,725 + 10988 mRNA_2620 0.24 1.1
609,771 + 10988 mRNA_2620 0.27 1.7
609,838 + 10988 mRNA_2620 0.31 -0.1
609,858 + 10988 mRNA_2620 0.32 0.2
610,005 - 10988 mRNA_2620 0.40 0.3
610,134 - 10988 mRNA_2620 0.47 -0.1
610,161 - 10988 mRNA_2620 0.49 1.7
610,424 - 10988 mRNA_2620 0.64 -0.3
610,453 - 10988 mRNA_2620 0.66 0.7
610,570 - 10988 mRNA_2620 0.72 1.1
610,864 + 10988 mRNA_2620 0.89 -1.5
610,881 - 0.9
610,885 + 0.7
610,901 - -0.6
611,012 - -0.1
611,025 + 0.7
611,106 + 0.9
611,132 - -0.5
611,143 - -0.4
611,153 - -0.0
611,153 - 0.8
611,153 - -1.7
611,162 + 0.3
611,164 - 0.1
611,165 + 0.4
611,166 + 0.6
611,180 + -1.0
611,182 - -1.0
611,182 + 0.2
611,183 - 2.0
611,184 - -0.0
611,184 - 0.6
611,184 - -0.9
611,190 - 0.5
611,194 + -0.2
611,199 + 0.7
611,199 + 0.2
611,209 + 0.3
611,209 + 0.2
611,210 + -0.9
611,210 + 1.5
611,210 - 0.5
611,211 + -0.3
611,245 + 2.0
611,246 - -1.4
611,246 - 0.9
611,252 + 3.2
611,254 + 0.2
611,263 + 1.6
611,265 + 0.8
611,300 - 0.4
611,302 - 0.8
611,314 + -0.7
611,314 - -1.2
611,316 - -0.2
611,320 - 0.7
611,330 + 1.6
611,332 + 0.1
611,334 + -1.0
611,338 - 2.3
611,341 - -0.1
611,355 - 0.6
611,363 + -0.4
611,455 - 0.8
611,476 + 1.9
611,612 + 10989 mRNA_2621 0.11 -0.1
611,614 - 10989 mRNA_2621 0.11 0.2
611,632 - 10989 mRNA_2621 0.12 -0.3
611,632 - 10989 mRNA_2621 0.12 -0.6
611,682 - 10989 mRNA_2621 0.15 0.8
611,746 - 10989 mRNA_2621 0.18 0.1
611,748 - 10989 mRNA_2621 0.18 1.8
611,749 - 10989 mRNA_2621 0.18 0.0
611,773 + 10989 mRNA_2621 0.19 1.0
611,792 + 10989 mRNA_2621 0.20 1.8
611,793 - 10989 mRNA_2621 0.20 1.0
611,805 - 10989 mRNA_2621 0.21 0.2
611,812 + 10989 mRNA_2621 0.21 -0.3
611,819 - 10989 mRNA_2621 0.22 1.1
611,848 + 10989 mRNA_2621 0.23 -0.0
611,891 - 10989 mRNA_2621 0.25 0.2
611,906 - 10989 mRNA_2621 0.26 0.6
611,929 - 10989 mRNA_2621 0.27 0.8
611,982 + 10989 mRNA_2621 0.30 1.3
612,051 - 10989 mRNA_2621 0.33 2.0