Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2617

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2616: 10984 - KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins, at 604328 to 604979 10984 mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605466 to 606411 10985 mRNA_2618: 10986 - Hypothetical Protein, at 606513 to 607761 10986

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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604,542 - 10984 mRNA_2616 0.33 1.2
604,663 - 10984 mRNA_2616 0.51 2.4
604,703 - 10984 mRNA_2616 0.58 -0.7
604,716 + 10984 mRNA_2616 0.60 0.5
604,891 + 10984 mRNA_2616 0.86 -0.2
604,960 + 0.3
604,984 - -0.7
605,013 - -0.7
605,027 - 1.3
605,029 + 2.6
605,030 - 0.7
605,153 - -0.3
605,163 - 2.4
605,166 + 0.0
605,169 - 0.6
605,177 - -0.3
605,182 + 0.3
605,183 + 0.8
605,213 + -0.3
605,314 + 1.3
605,314 + -0.1
605,317 + 0.9
605,750 + 10985 mRNA_2617 0.30 -0.1
605,920 - 10985 mRNA_2617 0.48 1.7
606,018 + 10985 mRNA_2617 0.58 0.1
606,274 - 10985 mRNA_2617 0.85 0.2
606,780 + 10986 mRNA_2618 0.21 0.6