Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2604

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2603: 10971 - Hypothetical Protein, at 573332 to 575202 10971 mRNA_2604: 10972 - BLAST Esterase, SGNH hydrolase-type domain protein [Rho..., at 575232 to 576935 10972 mRNA_2605: 10973 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 577060 to 580725 10973

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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574,289 + 10971 mRNA_2603 0.51 1.0
574,457 - 10971 mRNA_2603 0.60 -0.2
574,615 - 10971 mRNA_2603 0.69 -0.4
574,630 - 10971 mRNA_2603 0.69 -0.7
574,960 + 10971 mRNA_2603 0.87 -0.2
575,099 + 0.7
575,269 + 0.8
575,325 - 0.0
575,337 + 0.6
575,673 + 10972 mRNA_2604 0.26 -0.5
575,797 - 10972 mRNA_2604 0.33 -0.1
575,817 - 10972 mRNA_2604 0.34 -0.3
575,817 + 10972 mRNA_2604 0.34 -1.3
575,825 + 10972 mRNA_2604 0.35 1.0
575,947 - 10972 mRNA_2604 0.42 1.8
575,973 - 10972 mRNA_2604 0.43 -0.2
575,980 + 10972 mRNA_2604 0.44 -0.9
576,119 - 10972 mRNA_2604 0.52 1.7
576,370 + 10972 mRNA_2604 0.67 1.5
576,557 + 10972 mRNA_2604 0.78 0.3
576,836 + -0.5
576,973 + -0.2
576,974 - 1.4
576,975 + 0.0
576,978 - 0.5
576,995 + -0.2
576,996 + -0.5
576,999 + -0.1
576,999 + 0.1
577,002 - -2.0
577,003 + 0.6
577,007 + 0.1
577,008 + -0.3
577,013 - -0.1
577,022 + -0.3
577,144 + -0.1
577,147 - -0.1
577,148 - -0.8
577,151 - -1.9
577,152 + -1.2
577,156 - -1.6
577,159 + 0.4
577,288 - 1.5
577,301 + 1.2
577,305 + 1.6
577,322 + 1.0
577,438 - 10973 mRNA_2605 0.10 -0.4
577,468 - 10973 mRNA_2605 0.11 0.1
577,589 - 10973 mRNA_2605 0.14 1.4
577,589 - 10973 mRNA_2605 0.14 0.3
577,598 + 10973 mRNA_2605 0.15 1.0
577,628 + 10973 mRNA_2605 0.15 1.0
577,693 - 10973 mRNA_2605 0.17 -0.6
577,718 + 10973 mRNA_2605 0.18 -0.5
577,726 + 10973 mRNA_2605 0.18 3.5