Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2583

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494471 to 495097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951 mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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494,201 + 10949 mRNA_2581 0.85 2.0
494,232 + 10949 mRNA_2581 0.87 -0.6
494,321 - 0.4
494,326 - 0.7
494,479 - 1.1
494,633 + 10950 mRNA_2582 0.26 0.5
494,638 - 10950 mRNA_2582 0.27 1.8
494,651 - 10950 mRNA_2582 0.29 0.7
494,654 + 10950 mRNA_2582 0.29 -0.4
494,675 - 10950 mRNA_2582 0.33 1.3
494,680 + 10950 mRNA_2582 0.33 0.5
494,765 - 10950 mRNA_2582 0.47 0.4
494,769 - 10950 mRNA_2582 0.48 0.6
494,887 - 10950 mRNA_2582 0.66 2.8
494,926 + 10950 mRNA_2582 0.73 1.4
494,937 + 10950 mRNA_2582 0.74 0.7
494,952 - 10950 mRNA_2582 0.77 0.5
495,085 + 1.9
495,119 - -1.8
495,263 + 1.6
495,401 + -0.8
495,972 - 10951 mRNA_2583 0.18 -1.7
496,188 + 10951 mRNA_2583 0.23 -0.3
496,345 - 10951 mRNA_2583 0.27 1.3
496,363 - 10951 mRNA_2583 0.28 1.4
496,372 - 10951 mRNA_2583 0.28 -0.4
496,401 + 10951 mRNA_2583 0.29 -0.2
496,778 + 10951 mRNA_2583 0.38 0.2
496,901 + 10951 mRNA_2583 0.40 -0.0
496,925 + 10951 mRNA_2583 0.41 2.2
496,951 + 10951 mRNA_2583 0.42 -0.5
497,102 + 10951 mRNA_2583 0.45 -0.4
497,136 + 10951 mRNA_2583 0.46 -0.0
497,613 - 10951 mRNA_2583 0.57 -0.4
497,676 - 10951 mRNA_2583 0.59 1.0
497,843 - 10951 mRNA_2583 0.63 0.1
497,878 + 10951 mRNA_2583 0.64 -1.7
497,994 - 10951 mRNA_2583 0.66 0.2
498,017 + 10951 mRNA_2583 0.67 1.8
498,536 - 10951 mRNA_2583 0.79 -0.0
498,861 - 10951 mRNA_2583 0.87 0.6
498,918 + 10951 mRNA_2583 0.88 -2.0
499,013 + -1.0
499,320 + -0.7
499,323 - 1.0
499,471 + -0.1
499,479 - 1.2
499,635 - -1.2
499,639 + -0.9
499,751 - 0.2
499,757 - 0.0
499,760 - -0.4
499,773 - -0.7
499,778 + -0.7
499,778 + -0.1
499,885 - -0.1
499,942 - 10952 mRNA_2584 0.10 0.4
500,074 + 10952 mRNA_2584 0.15 -0.2
500,203 - 10952 mRNA_2584 0.19 -0.4
500,212 - 10952 mRNA_2584 0.20 -0.2
500,227 + 10952 mRNA_2584 0.20 0.5
500,252 + 10952 mRNA_2584 0.21 0.0
500,322 + 10952 mRNA_2584 0.23 1.4
500,329 - 10952 mRNA_2584 0.24 0.1
500,384 + 10952 mRNA_2584 0.25 -0.3
500,397 - 10952 mRNA_2584 0.26 -1.2
500,402 - 10952 mRNA_2584 0.26 0.6