Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2580

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947 mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948 mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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489,796 + 10947 mRNA_2579 0.82 -1.2
490,158 + 10947 mRNA_2579 0.90 2.3
490,216 - 0.3
490,720 - 3.1
490,732 - 1.1
490,734 + 1.2
490,737 - -0.7
490,749 + -0.1
490,750 + 0.7
490,753 - 1.0
490,824 - -1.9
490,845 + 0.2
491,121 - 10948 mRNA_2580 0.25 0.1
491,194 - 10948 mRNA_2580 0.29 -1.2
491,387 - 10948 mRNA_2580 0.41 -0.4
491,425 - 10948 mRNA_2580 0.44 -0.2
491,501 - 10948 mRNA_2580 0.48 0.2
491,582 + 10948 mRNA_2580 0.53 0.1
491,833 - 10948 mRNA_2580 0.68 1.1
491,849 - 10948 mRNA_2580 0.69 -0.5
491,855 + 10948 mRNA_2580 0.70 1.4
492,042 + 10948 mRNA_2580 0.81 -1.1
492,146 - 10948 mRNA_2580 0.88 1.2
492,187 - -0.5
492,204 - 0.3
492,286 - -0.2
492,300 - -0.3
492,595 + -0.0
492,607 + -1.2
492,609 - -1.4
492,614 + 2.1
492,630 + 2.2
492,657 - 0.4
492,672 - 0.4
492,729 + -0.0
492,762 + 0.2
492,766 - -0.8
492,772 + 0.5
492,775 - 0.7
492,781 - 1.1
492,784 + -2.8
492,799 - -0.4
492,807 + 1.6
492,851 - 0.5
492,930 + 0.5