Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2579

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2578: 10946 - KOG3574 Acetyl-CoA transporter, at 483636 to 486060 10946 mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947 mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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485,834 + -0.5
485,845 + 0.9
485,862 - 0.3
485,987 - -1.0
485,992 + 0.9
486,000 + 0.3
486,000 + -0.4
486,117 - 0.1
486,121 + -0.4
486,124 - 1.7
486,151 - 0.0
486,194 - 0.6
486,431 - -2.1
486,604 + -0.2
486,693 + 10947 mRNA_2579 0.11 -0.5
486,765 + 10947 mRNA_2579 0.13 -1.5
487,035 - 10947 mRNA_2579 0.19 -0.6
487,158 + 10947 mRNA_2579 0.22 0.1
487,432 + 10947 mRNA_2579 0.28 -0.7
487,781 - 10947 mRNA_2579 0.36 -0.0
487,858 + 10947 mRNA_2579 0.38 -0.7
488,060 + 10947 mRNA_2579 0.42 -1.1
488,581 - 10947 mRNA_2579 0.54 0.1
489,231 - 10947 mRNA_2579 0.69 -0.4
489,320 + 10947 mRNA_2579 0.71 1.7
489,410 + 10947 mRNA_2579 0.73 -2.2
489,508 + 10947 mRNA_2579 0.75 -0.2
489,519 - 10947 mRNA_2579 0.75 0.2
489,529 + 10947 mRNA_2579 0.75 -1.4
489,686 + 10947 mRNA_2579 0.79 0.7
489,796 + 10947 mRNA_2579 0.82 -1.2
490,158 + 10947 mRNA_2579 0.90 2.3
490,216 - 0.3
490,720 - 3.1
490,732 - 1.1
490,734 + 1.2
490,737 - -0.7
490,749 + -0.1
490,750 + 0.7
490,753 - 1.0
490,824 - -1.9
490,845 + 0.2
491,121 - 10948 mRNA_2580 0.25 0.1
491,194 - 10948 mRNA_2580 0.29 -1.2
491,387 - 10948 mRNA_2580 0.41 -0.4
491,425 - 10948 mRNA_2580 0.44 -0.2
491,501 - 10948 mRNA_2580 0.48 0.2
491,582 + 10948 mRNA_2580 0.53 0.1