Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2569

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463556 to 465484 10936 mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466083 to 468142 10937 mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468329 to 470280 10938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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465,364 + -0.3
465,378 - -1.0
465,379 + -1.5
465,390 - -1.1
465,531 - -0.1
465,666 - 0.2
465,667 - -1.2
465,674 - 0.3
465,684 + 0.6
465,687 + 0.8
465,693 + -0.7
465,725 + -0.1
465,732 + 1.6
465,822 - 2.0
465,855 - 0.5
465,857 - 0.1
465,877 + 0.6
465,888 - 2.0
465,889 - 2.5
465,892 + -0.8
465,903 + -0.0
465,912 - 2.4
465,920 + -0.3
465,928 - 0.2
465,965 - -0.3
465,987 + 1.8
465,990 + 0.6
466,014 + -0.6
466,015 - -0.2
466,021 + 0.4
466,155 - 0.0
466,157 + -1.1
466,309 - 10937 mRNA_2569 0.11 0.6
466,500 + 10937 mRNA_2569 0.20 -0.3
466,507 + 10937 mRNA_2569 0.21 0.6
466,775 + 10937 mRNA_2569 0.34 1.4
467,033 - 10937 mRNA_2569 0.46 -0.2
467,047 - 10937 mRNA_2569 0.47 -0.2
467,184 + 10937 mRNA_2569 0.53 -0.1
467,248 + 10937 mRNA_2569 0.57 -0.1
467,620 - 10937 mRNA_2569 0.75 -0.1
467,871 + 10937 mRNA_2569 0.87 -0.3
468,063 - 0.9
468,349 + -0.8
468,356 + 1.3
468,459 - 1.1
468,636 - 10938 mRNA_2570 0.16 -0.1
468,661 + 10938 mRNA_2570 0.17 1.6
468,924 + 10938 mRNA_2570 0.30 -0.0