Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2556

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432774 to 435316 10923 mRNA_2556: 10924 - Hypothetical Protein, at 435593 to 437275 10924 mRNA_2557: 10925 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 437565 to 439347 10925

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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435,486 + 0.1
435,615 + 0.7
435,647 + -1.3
435,753 + 0.5
435,753 + 0.2
435,755 + 0.3
435,756 + -0.1
435,761 - 0.4
435,851 - 10924 mRNA_2556 0.15 -0.2
435,879 + 10924 mRNA_2556 0.17 1.2
435,909 - 10924 mRNA_2556 0.19 0.7
435,918 + 10924 mRNA_2556 0.19 0.3
436,016 + 10924 mRNA_2556 0.25 2.8
436,042 + 10924 mRNA_2556 0.27 0.5
436,350 - 10924 mRNA_2556 0.45 0.0
436,363 - 10924 mRNA_2556 0.46 -0.9
436,519 - 10924 mRNA_2556 0.55 2.7
436,575 - 10924 mRNA_2556 0.58 0.2
436,757 - 10924 mRNA_2556 0.69 0.2
437,054 - 10924 mRNA_2556 0.87 0.7
437,175 + 0.1
437,449 + -1.0
437,521 + 1.0
438,247 - 10925 mRNA_2557 0.38 2.2
438,247 - 10925 mRNA_2557 0.38 1.7
438,253 + 10925 mRNA_2557 0.39 2.2
438,253 + 10925 mRNA_2557 0.39 -1.1
438,253 - 10925 mRNA_2557 0.39 0.7