Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2550

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2549: 10917 - HMMPfam-Chromatin modification-related protein EAF7-PF07904, at 423711 to 424964 10917 mRNA_2550: 10918 - KOG3116 Predicted C3H1-type Zn-finger protein, at 425175 to 426192 10918 mRNA_2551: 10919 - K00799 GST, gst glutathione S-transferase, at 426245 to 427122 10919

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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424,308 + 10917 mRNA_2549 0.48 0.6
424,972 + 0.1
424,993 + 2.8
424,995 - 2.0
425,023 - -0.1
425,284 - 10918 mRNA_2550 0.11 0.3
425,287 - 10918 mRNA_2550 0.11 0.8
425,296 + 10918 mRNA_2550 0.12 -0.4
425,438 - 10918 mRNA_2550 0.26 1.1
425,440 - 10918 mRNA_2550 0.26 -0.6
425,720 - 10918 mRNA_2550 0.54 0.0
425,726 + 10918 mRNA_2550 0.54 1.1
425,981 - 10918 mRNA_2550 0.79 -0.2
426,130 - 1.0
426,161 + -0.5
426,599 - 10919 mRNA_2551 0.40 0.9
426,608 + 10919 mRNA_2551 0.41 1.7
426,891 + 10919 mRNA_2551 0.74 0.0