Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2519

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342708 to 344522 10887 mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345046 to 346549 10888

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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341,992 + 0.2
342,006 + 1.5
342,029 - 0.3
342,076 - 1.0
342,085 - -0.1
342,087 - 0.3
342,094 + 2.7
342,147 + -0.1
342,165 - 0.7
342,167 + 1.0
342,168 + 0.9
342,179 - 1.0
342,191 - 1.7
342,198 + 1.5
342,214 - 0.7
342,217 - -0.6
342,293 - 0.7
342,298 - -0.3
342,298 - 0.1
342,302 + 1.5
342,302 - 0.6
342,302 + -0.3
342,337 + 0.1
342,341 + 0.4
342,341 + -0.7
342,344 + -1.8
342,355 + 0.1
342,430 + 0.5
342,603 + 1.8
342,707 + 0.3
342,882 - -0.6
343,002 - 10887 mRNA_2519 0.16 -1.3
343,184 - 10887 mRNA_2519 0.26 -0.6
343,331 + 10887 mRNA_2519 0.34 0.2
343,340 - 10887 mRNA_2519 0.35 2.5
343,434 + 10887 mRNA_2519 0.40 -0.3
343,758 - 10887 mRNA_2519 0.58 1.1
344,049 - 10887 mRNA_2519 0.74 2.0
344,212 + 10887 mRNA_2519 0.83 -0.9
344,385 + -1.3
344,387 - -0.1
344,664 - -0.3
344,680 - -0.0
344,688 + 0.3
344,774 - -1.0
344,814 + -0.9
344,831 - -0.5
344,968 + -0.1
345,099 - 0.5
345,142 - 0.1
345,355 - 10888 mRNA_2520 0.21 0.9
345,406 - 10888 mRNA_2520 0.24 1.9
345,420 + 10888 mRNA_2520 0.25 0.3