Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2518

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337169 to 339877 10885 mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340022 to 341494 10886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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339,151 - 10885 mRNA_2517 0.73 1.1
339,157 - 10885 mRNA_2517 0.73 -0.1
339,170 - 10885 mRNA_2517 0.74 0.1
339,177 + 10885 mRNA_2517 0.74 1.0
339,185 + 10885 mRNA_2517 0.74 1.2
339,218 - 10885 mRNA_2517 0.76 1.6
339,222 + 10885 mRNA_2517 0.76 1.8
339,224 - 10885 mRNA_2517 0.76 0.7
339,230 + 10885 mRNA_2517 0.76 -0.5
339,230 - 10885 mRNA_2517 0.76 1.6
339,234 + 10885 mRNA_2517 0.76 -0.9
339,239 - 10885 mRNA_2517 0.76 1.0
339,242 - 10885 mRNA_2517 0.77 -0.1
339,243 + 10885 mRNA_2517 0.77 0.9
339,252 - 10885 mRNA_2517 0.77 -0.2
339,279 + 10885 mRNA_2517 0.78 1.5
339,367 - 10885 mRNA_2517 0.81 0.6
339,368 - 10885 mRNA_2517 0.81 0.9
339,381 - 10885 mRNA_2517 0.82 1.0
339,491 + 10885 mRNA_2517 0.86 0.6
339,798 - 1.9
339,909 - 0.8
339,938 + 0.7
339,939 + -0.4
339,942 - 1.5
339,946 - 0.0
339,947 + 0.5
339,951 + -0.6
339,951 - 0.2
339,953 + -0.8
339,959 + -1.2
339,963 + -1.3
340,104 - 0.8
340,112 + 0.2
340,147 + 1.8
340,244 + 10886 mRNA_2518 0.15 0.1
340,259 + 10886 mRNA_2518 0.16 1.1
340,408 + 10886 mRNA_2518 0.26 -0.1
340,537 + 10886 mRNA_2518 0.35 1.3
340,822 - 10886 mRNA_2518 0.54 1.0
341,406 - 1.9
341,697 - 1.9
341,697 + 0.8
341,703 + -0.7
341,992 + 0.2
342,006 + 1.5
342,029 - 0.3
342,076 - 1.0
342,085 - -0.1
342,087 - 0.3
342,094 + 2.7
342,147 + -0.1
342,165 - 0.7
342,167 + 1.0
342,168 + 0.9
342,179 - 1.0
342,191 - 1.7
342,198 + 1.5
342,214 - 0.7
342,217 - -0.6
342,293 - 0.7
342,298 - -0.3
342,298 - 0.1
342,302 + 1.5
342,302 - 0.6
342,302 + -0.3
342,337 + 0.1
342,341 + 0.4
342,341 + -0.7
342,344 + -1.8
342,355 + 0.1
342,430 + 0.5