Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2497

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288113 to 290739 10864 mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291079 to 294153 10865

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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290,112 - 10864 mRNA_2496 0.76 3.4
290,113 + 10864 mRNA_2496 0.76 0.8
290,155 + 10864 mRNA_2496 0.78 -0.3
290,193 + 10864 mRNA_2496 0.79 0.4
290,196 - 10864 mRNA_2496 0.79 1.6
290,263 - 10864 mRNA_2496 0.82 0.8
290,345 + 10864 mRNA_2496 0.85 -0.6
290,392 - 10864 mRNA_2496 0.87 0.1
290,455 + 10864 mRNA_2496 0.89 3.0
290,495 - -0.3
290,536 - 0.3
290,539 - -0.4
290,554 + -0.5
290,559 + -0.7
290,562 + 1.3
290,562 + 1.3
290,593 + 2.8
290,612 + 0.9
290,634 + 1.4
290,702 + -1.2
290,724 + 1.6
290,751 - -0.4
290,827 - 1.5
290,957 + 0.6
290,994 + 1.5
291,053 - 1.3
291,085 + 1.0
291,127 - 1.3
291,472 - 10865 mRNA_2497 0.13 0.2
291,495 + 10865 mRNA_2497 0.14 0.2
291,764 - 10865 mRNA_2497 0.22 -1.1
291,878 + 10865 mRNA_2497 0.26 1.7
291,891 - 10865 mRNA_2497 0.26 0.2
292,231 + 10865 mRNA_2497 0.37 -0.2
292,528 - 10865 mRNA_2497 0.47 0.4
292,601 + 10865 mRNA_2497 0.49 0.3
292,683 + 10865 mRNA_2497 0.52 0.9
292,950 + 10865 mRNA_2497 0.61 -0.0
293,400 + 10865 mRNA_2497 0.75 0.5
293,728 + 10865 mRNA_2497 0.86 -0.5
293,943 + 1.2
293,966 - -0.0
293,976 + -0.3
293,998 - -0.2
294,134 + 1.3
294,299 - 0.3
294,326 - -1.3
294,438 - 1.5
294,450 - 0.5
294,543 - -1.4
294,578 - -0.2
294,580 - 0.1
294,717 + -0.3
294,729 - 0.6
294,731 + 0.1
294,738 - 0.6
294,773 - 0.7
294,855 - -0.3
294,863 - 0.0
294,869 + 1.2
294,875 + 0.3
294,875 - -0.0
294,879 + -0.5
294,888 + 0.8
294,915 + -0.7
294,918 - 0.2
294,991 - -0.2
294,996 - -0.1
295,011 + 0.7
295,015 + -0.2
295,025 - 1.7
295,028 + 2.0
295,036 + -0.2
295,037 + 1.9
295,039 - -0.6
295,041 - 0.0
295,042 + 0.4
295,044 - 1.9
295,045 + 0.6
295,045 - 0.2
295,048 + 0.4
295,048 - 0.1
295,050 + -0.2
295,054 + 0.9
295,069 + 1.4
295,083 + 0.3
295,099 + 1.3
295,101 - -0.2