Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2420

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79410 to 80151 10787 mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80430 to 82352 10788 mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82479 to 84495 10789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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79,745 - 10787 mRNA_2419 0.45 0.5
79,768 + 10787 mRNA_2419 0.48 0.0
79,852 - 10787 mRNA_2419 0.60 -0.6
80,030 - 10787 mRNA_2419 0.84 1.3
80,044 - 10787 mRNA_2419 0.85 0.4
80,321 + 0.9
80,325 - 0.3
80,334 - 0.2
80,346 + 1.5
80,349 - 0.4
80,481 - -0.6
80,485 - -0.2
80,663 + 10788 mRNA_2420 0.12 0.8
80,760 + 10788 mRNA_2420 0.17 0.7
80,781 - 10788 mRNA_2420 0.18 1.9
80,918 + 10788 mRNA_2420 0.25 -0.6
81,041 - 10788 mRNA_2420 0.32 -0.4
81,083 + 10788 mRNA_2420 0.34 0.1
81,323 - 10788 mRNA_2420 0.46 -0.4
81,341 + 10788 mRNA_2420 0.47 1.6
81,431 - 10788 mRNA_2420 0.52 0.3
81,484 - 10788 mRNA_2420 0.55 -0.4
81,764 + 10788 mRNA_2420 0.69 -1.2
82,499 - 0.1
82,566 - 0.8
83,061 - 10789 mRNA_2421 0.29 1.2
83,246 + 10789 mRNA_2421 0.38 -0.4