Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2409

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55235 to 56824 10776 mRNA_2409: 10777 - Hypothetical Protein, at 56909 to 58334 10777 mRNA_2410: 10778 - Hypothetical Protein, at 59167 to 60066 10778

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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56,154 + 10776 mRNA_2408 0.58 1.0
56,323 + 10776 mRNA_2408 0.68 1.2
56,374 - 10776 mRNA_2408 0.72 1.5
56,393 + 10776 mRNA_2408 0.73 0.3
56,410 - 10776 mRNA_2408 0.74 0.2
56,503 + 10776 mRNA_2408 0.80 0.7
56,511 - 10776 mRNA_2408 0.80 -0.7
56,652 - 10776 mRNA_2408 0.89 0.1
56,763 + 0.4
56,764 + 2.0
56,792 - -0.1
56,927 - 1.4
56,941 - 0.7
56,953 + 1.3
57,091 + 10777 mRNA_2409 0.13 -0.2
57,101 + 10777 mRNA_2409 0.13 2.0
57,130 - 10777 mRNA_2409 0.15 1.8
57,384 + 10777 mRNA_2409 0.33 0.6
57,701 + 10777 mRNA_2409 0.56 1.0
57,979 + 10777 mRNA_2409 0.75 1.4
58,106 + 10777 mRNA_2409 0.84 0.1
58,113 + 10777 mRNA_2409 0.84 2.5
58,412 + -1.8
58,445 + 0.1
58,542 + -0.3
58,691 - -0.3
58,699 + -0.1
58,699 - 0.4
58,824 - -0.5
58,851 - 0.3
58,935 - 1.9
58,999 - 2.6
59,010 + 1.8
59,017 - 1.0
59,028 + 1.0
59,035 + 0.3
59,042 + 0.2
59,054 - -1.0
59,153 - 1.2
59,154 + -0.4
59,162 + 0.6
59,170 - -0.4
59,304 + 10778 mRNA_2410 0.15 0.4
59,323 + 10778 mRNA_2410 0.17 1.4