Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2389

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2388: 10756 - K14781 DHR2 ATP-dependent RNA helicase DHR2, at 595 to 3686 10756 mRNA_2389: 10757 - K10901 BLM, RECQL3, SGS1 bloom syndrome protein, at 4587 to 7344 10757 mRNA_2390: 10758 - Hypothetical Protein, at 8054 to 9276 10758

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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3,782 + 0.6
3,821 + 0.7
4,050 - 1.4
4,089 - 1.9
4,160 + 2.5
4,163 - 1.4
4,185 + 1.6
4,250 - -2.5
4,312 + 0.6
4,543 - 1.1
4,544 + 0.9
4,693 + 2.3
4,810 + -2.6
4,816 + 1.3
4,819 - 0.2
4,819 - 0.1
4,879 - 10757 mRNA_2389 0.11 2.4
4,889 + 10757 mRNA_2389 0.11 0.9
5,047 + 10757 mRNA_2389 0.17 0.1
5,047 + 10757 mRNA_2389 0.17 1.7
5,075 + 10757 mRNA_2389 0.18 1.9
5,231 - 10757 mRNA_2389 0.23 0.8
5,267 + 10757 mRNA_2389 0.25 1.1
5,306 - 10757 mRNA_2389 0.26 0.2
5,336 - 10757 mRNA_2389 0.27 1.5
5,390 + 10757 mRNA_2389 0.29 0.4
5,391 - 10757 mRNA_2389 0.29 -0.8
5,432 + 10757 mRNA_2389 0.31 0.0
5,488 - 10757 mRNA_2389 0.33 -0.6
5,494 + 10757 mRNA_2389 0.33 1.8
5,510 - 10757 mRNA_2389 0.33 0.1
5,519 + 10757 mRNA_2389 0.34 -0.2
5,561 - 10757 mRNA_2389 0.35 0.0
5,666 - 10757 mRNA_2389 0.39 1.4
5,920 - 10757 mRNA_2389 0.48 1.6
5,952 + 10757 mRNA_2389 0.49 0.4
5,990 + 10757 mRNA_2389 0.51 -0.3
6,227 + 10757 mRNA_2389 0.59 -1.2
6,238 - 10757 mRNA_2389 0.60 0.0
6,249 + 10757 mRNA_2389 0.60 0.0
6,388 + 10757 mRNA_2389 0.65 0.8
6,419 + 10757 mRNA_2389 0.66 0.0
6,546 - 10757 mRNA_2389 0.71 -1.5
6,553 + 10757 mRNA_2389 0.71 -0.1
6,660 + 10757 mRNA_2389 0.75 1.8
6,713 + 10757 mRNA_2389 0.77 0.7
6,938 - 10757 mRNA_2389 0.85 1.6
6,962 + 10757 mRNA_2389 0.86 0.4
7,171 - 2.0
7,187 - 2.0
7,191 + 1.1
7,214 + 1.4
7,310 + 1.4
7,337 + 1.1
7,360 + -0.8
7,820 - -1.2