Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2303

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563015 to 564806 10670 mRNA_2303: 10671 - Hypothetical Protein, at 565712 to 566657 10671 mRNA_2304: 10672 - Hypothetical Protein, at 567046 to 568484 10672

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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564,716 + 0.3
564,717 + -1.1
564,725 + -0.1
564,763 - -1.3
564,862 + 0.5
564,863 + -0.3
564,867 + 0.7
564,870 + -0.4
564,875 - -1.2
564,886 - 0.5
564,892 + 1.8
564,982 + 0.2
564,987 - -0.2
564,989 + 0.3
564,996 - -0.7
564,997 + 1.3
564,998 - 0.6
565,002 + -0.0
565,009 + -0.4
565,109 - 0.7
565,134 + -0.2
565,136 + 2.1
565,162 + 1.1
565,181 + 0.1
565,188 - -0.3
565,194 + 0.6
565,194 + -0.1
565,207 + 1.1
565,223 + 1.0
565,315 + -1.1
565,316 + 1.4
565,327 - 0.8
565,333 - -0.4
565,339 + 2.0
565,360 - -1.3
565,377 - 0.8
565,388 + -0.5
565,390 - 0.0
565,391 + 0.2
565,395 - -0.6
565,405 + 0.1
565,408 + 0.5
565,416 - 0.1
565,416 + 0.5
565,427 - 0.3
565,432 - -0.2
565,433 + -0.8
565,456 + 0.5
565,561 - 1.1
565,601 + 0.3
566,216 + 10671 mRNA_2303 0.53 0.9
566,359 + 10671 mRNA_2303 0.68 0.2
566,486 - 10671 mRNA_2303 0.82 0.9
566,630 + -0.3
566,763 - 1.0
566,765 - -0.2
566,765 - -1.3
566,891 - 0.2
567,210 - 10672 mRNA_2304 0.11 1.6
567,228 - 10672 mRNA_2304 0.13 -0.3
567,358 - 10672 mRNA_2304 0.22 0.3
567,513 + 10672 mRNA_2304 0.32 0.4
567,526 + 10672 mRNA_2304 0.33 1.4