Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2290

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2289: 10657 - KOG2454 Betaine aldehyde dehydrogenase, at 536074 to 538335 10657 mRNA_2290: 10658 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 538803 to 539885 10658

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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537,930 + 10657 mRNA_2289 0.82 -0.1
537,964 - 10657 mRNA_2289 0.84 1.1
538,086 - 10657 mRNA_2289 0.89 0.1
538,322 + -1.0
538,355 - -0.5
538,368 - 2.7
538,386 - -1.3
538,437 - 0.5
538,452 - 1.1
538,469 - 1.8
538,475 - 0.3
538,480 - -0.5
538,612 + 0.7
538,619 + -0.3
538,976 - 10658 mRNA_2290 0.16 0.5
539,126 - 10658 mRNA_2290 0.30 0.7
539,439 - 10658 mRNA_2290 0.59 0.1
539,577 + 10658 mRNA_2290 0.71 1.5
539,583 + 10658 mRNA_2290 0.72 0.0
539,756 + 10658 mRNA_2290 0.88 0.3
539,899 - -0.6
540,336 - -0.5
540,624 + 0.2
540,630 + 1.0
540,657 + 0.8
540,764 - 1.0
540,791 - -0.6
540,812 + -0.4
540,820 + -0.1
540,829 + 0.8