Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2289

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2288: 10656 - BLAST CLP1-like protein [Schizophyllum commune H4-8], at 535307 to 535861 10656 mRNA_2289: 10657 - KOG2454 Betaine aldehyde dehydrogenase, at 536074 to 538335 10657 mRNA_2290: 10658 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 538803 to 539885 10658

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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535,135 - 1.4
535,195 + 1.3
535,920 - 2.3
536,046 - 0.1
536,059 + -0.6
536,070 - 0.1
536,232 + 0.6
536,496 + 10657 mRNA_2289 0.19 -1.3
536,513 - 10657 mRNA_2289 0.19 0.0
536,805 + 10657 mRNA_2289 0.32 -0.3
537,082 - 10657 mRNA_2289 0.45 0.1
537,510 + 10657 mRNA_2289 0.63 0.2
537,527 + 10657 mRNA_2289 0.64 -0.1
537,930 + 10657 mRNA_2289 0.82 -0.1
537,964 - 10657 mRNA_2289 0.84 1.1
538,086 - 10657 mRNA_2289 0.89 0.1
538,322 + -1.0
538,355 - -0.5
538,368 - 2.7
538,386 - -1.3
538,437 - 0.5
538,452 - 1.1
538,469 - 1.8
538,475 - 0.3
538,480 - -0.5
538,612 + 0.7
538,619 + -0.3
538,976 - 10658 mRNA_2290 0.16 0.5
539,126 - 10658 mRNA_2290 0.30 0.7