Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2270

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2269: 10637 - Hypothetical Protein, at 491612 to 491803 10637 mRNA_2270: 10638 - K19833 CLA4 serine/threonine-protein kinase CLA4, at 492259 to 494809 10638 mRNA_2271: 10639 - Hypothetical Protein, at 494808 to 495275 10639 mRNA_2272: 10640 - Hypothetical Protein, at 495737 to 495928 10640

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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491,321 - -0.6
491,350 - 1.0
491,377 + 0.3
491,399 + 0.4
491,534 - 0.3
491,535 + 0.9
491,552 + -0.1
493,372 + 10638 mRNA_2270 0.44 0.1
493,394 - 10638 mRNA_2270 0.44 0.0
493,824 - 10638 mRNA_2270 0.61 -0.4
493,965 + 10638 mRNA_2270 0.67 0.6
493,981 - 10638 mRNA_2270 0.68 0.0
494,113 + 10638 mRNA_2270 0.73 1.4
494,375 - 10638 mRNA_2270 0.83 0.4
494,381 - 10638 mRNA_2270 0.83 0.2
494,435 - 10638 mRNA_2270 0.85 -2.4
494,456 + 10638 mRNA_2270 0.86 2.4
494,549 - 10638 mRNA_2270 0.90 1.8
494,698 - 0.7
494,708 + 0.7
494,713 + 2.9
494,848 + 1.3
494,855 - 10639 mRNA_2271 0.10 -0.4
494,855 - 10639 mRNA_2271 0.10 1.1
494,857 + 10639 mRNA_2271 0.10 1.6
494,858 + 10639 mRNA_2271 0.11 -0.9
494,880 - 10639 mRNA_2271 0.15 -0.5
494,906 - 10639 mRNA_2271 0.21 0.2
494,986 + 10639 mRNA_2271 0.38 0.4
495,001 + 10639 mRNA_2271 0.41 0.2
495,006 + 10639 mRNA_2271 0.42 0.8
495,007 - 10639 mRNA_2271 0.43 0.9
495,033 - 10639 mRNA_2271 0.48 -0.3
495,044 + 10639 mRNA_2271 0.50 0.4
495,155 - 10639 mRNA_2271 0.74 0.2
495,160 - 10639 mRNA_2271 0.75 -0.3