Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2242

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444470 to 447596 10609 mRNA_2242: 10610 - Hypothetical Protein, at 448063 to 449685 10610 mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450168 to 452098 10611

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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447,221 - 10609 mRNA_2241 0.88 0.5
447,245 - 10609 mRNA_2241 0.89 0.6
447,345 - -0.7
447,532 - 0.1
447,548 - -1.4
447,585 + -0.5
447,666 + 0.2
447,666 + 0.2
447,667 - 0.8
447,669 + 2.3
447,671 - -0.1
447,683 - 0.7
447,689 - 1.6
447,800 + 0.6
447,808 + 0.4
447,811 - 0.3
447,840 - -0.2
447,884 + -0.6
447,892 + 0.0
447,928 + -2.0
448,015 - 1.0
448,031 - 0.3
448,043 - 0.2
448,044 + 0.2
448,044 - 0.5
448,053 - -0.5
448,073 + 1.1
448,183 + 1.1
448,184 + 0.3
448,210 + 1.2
448,217 + 0.9
448,240 - 10610 mRNA_2242 0.11 2.5
448,247 - 10610 mRNA_2242 0.11 0.4
448,329 - 10610 mRNA_2242 0.16 0.8
448,335 + 10610 mRNA_2242 0.17 0.6
448,339 - 10610 mRNA_2242 0.17 1.7
448,353 + 10610 mRNA_2242 0.18 0.9
448,353 + 10610 mRNA_2242 0.18 -0.1
448,358 - 10610 mRNA_2242 0.18 1.0
448,364 - 10610 mRNA_2242 0.19 1.5
448,384 + 10610 mRNA_2242 0.20 2.6
448,403 - 10610 mRNA_2242 0.21 -0.2
448,446 + 10610 mRNA_2242 0.24 0.1
448,478 + 10610 mRNA_2242 0.26 -1.2
448,483 - 10610 mRNA_2242 0.26 -0.1
448,494 + 10610 mRNA_2242 0.27 -0.8
448,497 - 10610 mRNA_2242 0.27 -0.7
448,502 + 10610 mRNA_2242 0.27 -0.2
448,507 + 10610 mRNA_2242 0.27 0.4
448,609 - 10610 mRNA_2242 0.34 0.5
448,611 - 10610 mRNA_2242 0.34 -0.0
448,623 + 10610 mRNA_2242 0.35 1.0
448,640 + 10610 mRNA_2242 0.36 3.4
448,647 - 10610 mRNA_2242 0.36 1.9
448,656 + 10610 mRNA_2242 0.37 1.6
448,662 - 10610 mRNA_2242 0.37 -0.5
448,851 + 10610 mRNA_2242 0.49 -0.0
448,940 + 10610 mRNA_2242 0.54 0.3
448,967 - 10610 mRNA_2242 0.56 0.1
449,089 + 10610 mRNA_2242 0.63 0.3
449,091 - 10610 mRNA_2242 0.63 0.1
449,101 + 10610 mRNA_2242 0.64 0.9
449,241 + 10610 mRNA_2242 0.73 -0.5
449,423 - 10610 mRNA_2242 0.84 0.2
449,680 + 1.3
449,698 + -0.2
449,833 + -0.6
449,996 + -1.2
450,014 - -0.4
450,306 + 0.5
450,420 + 10611 mRNA_2243 0.13 -0.9
450,572 + 10611 mRNA_2243 0.21 0.2