Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2215

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376563 to 378868 10582 mRNA_2215: 10583 - K01737 queD, ptpS, PTS 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 379007 to 379807 10583 mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380175 to 381550 10584

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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378,430 + 10582 mRNA_2214 0.81 0.5
378,697 + -0.1
379,114 - 10583 mRNA_2215 0.13 -0.5
379,131 - 10583 mRNA_2215 0.15 -1.1
379,279 - 10583 mRNA_2215 0.34 1.7
379,571 + 10583 mRNA_2215 0.70 -1.5
379,702 - 10583 mRNA_2215 0.87 -0.6
379,815 - 0.4
379,834 - -0.7
379,838 - -0.3
380,007 + 0.4
380,024 - 0.4
380,116 - 0.5
380,116 + 2.2
380,139 + -0.6
380,290 - -0.6
380,296 - 1.3
380,586 + 10584 mRNA_2216 0.30 0.2
380,731 - 10584 mRNA_2216 0.40 -0.4