Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2190

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2190: 10558 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 301262 to 303174 10558 mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304016 to 306697 10559

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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300,332 + 0.4
300,339 - 0.7
300,352 + -0.3
300,356 + -0.2
300,359 - -0.0
300,397 + 0.4
300,503 - 0.9
300,506 - 0.1
300,543 - 0.6
300,619 - -0.2
300,674 + 1.0
300,680 + 0.3
300,688 + -0.1
300,690 + -0.1
300,840 + 1.9
300,963 - 0.0
300,978 - 0.0
300,978 - -1.4
300,979 - 0.8
300,989 + -0.1
300,991 + -0.4
301,144 + 1.5
301,145 - 1.2
301,151 - -0.1
301,155 + 0.2
301,162 - -0.7
301,164 + -3.0
301,168 + 0.0
301,169 + 0.4
301,170 + -0.5
301,177 + 0.4
301,188 - 0.2
301,316 - -0.1
301,316 - 0.0
301,375 + -0.2
301,419 - 0.0
301,476 - 10558 mRNA_2190 0.11 0.8
302,065 + 10558 mRNA_2190 0.42 1.1
302,172 - 10558 mRNA_2190 0.48 -0.2
302,343 + 10558 mRNA_2190 0.57 1.5
302,345 - 10558 mRNA_2190 0.57 1.5
302,651 - 10558 mRNA_2190 0.73 -1.2
302,688 + 10558 mRNA_2190 0.75 -1.1
302,739 + 10558 mRNA_2190 0.77 0.1
302,799 - 10558 mRNA_2190 0.80 0.5
302,800 + 10558 mRNA_2190 0.80 0.2
302,850 + 10558 mRNA_2190 0.83 -1.0
302,879 - 10558 mRNA_2190 0.85 0.9
303,371 - 0.8
303,387 + -0.1
303,532 - 2.1
303,691 - 0.3
303,692 - 0.5
303,822 + 0.5
303,955 - 0.6
304,101 + 1.2