Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2184

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284423 to 286019 10551 mRNA_2184: 10552 - Hypothetical Protein, at 286236 to 287917 10552 mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288686 to 288844 10553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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285,280 + 10551 mRNA_2183 0.54 0.7
285,570 - 10551 mRNA_2183 0.72 0.6
285,619 - 10551 mRNA_2183 0.75 0.9
285,688 - 10551 mRNA_2183 0.79 2.1
285,833 + 10551 mRNA_2183 0.88 1.9
285,853 - 10551 mRNA_2183 0.90 -1.6
286,012 + 0.1
286,124 - -1.6
286,134 - 0.3
286,135 - 0.7
286,171 - -0.6
286,189 - -0.2
286,206 - 0.3
286,249 + 1.1
286,272 + 0.9
286,373 - -0.3
286,405 + 10552 mRNA_2184 0.10 0.5
286,697 + 10552 mRNA_2184 0.27 0.2
286,724 - 10552 mRNA_2184 0.29 0.7
287,027 + 10552 mRNA_2184 0.47 2.3
287,331 - 10552 mRNA_2184 0.65 0.4
287,331 + 10552 mRNA_2184 0.65 -0.1
287,594 - 10552 mRNA_2184 0.81 -0.8
288,160 - 1.6
288,421 + 0.0
288,477 - -0.3
288,484 + 0.4
288,546 + -0.1
288,557 - 0.3
288,561 - -0.5
288,568 + -0.6
288,591 + 0.1
288,622 + 0.1
288,626 - -0.0
288,632 + 0.0
288,640 + -0.1
288,652 + 0.1
288,669 + 1.2
288,716 - 10553 mRNA_2185 0.19 -1.0
288,717 - 10553 mRNA_2185 0.19 -0.5
288,733 + 10553 mRNA_2185 0.30 0.9
288,784 - 10553 mRNA_2185 0.62 0.9
288,883 - -0.2
288,891 + 0.9