Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2162

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220965 to 223272 10529 mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223612 to 225989 10530 mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226223 to 229992 10531

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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222,870 - 10529 mRNA_2161 0.83 0.2
222,897 + 10529 mRNA_2161 0.84 1.2
222,972 - 10529 mRNA_2161 0.87 1.3
223,126 + 1.0
223,293 - 1.4
223,306 - 0.5
223,702 - -1.1
223,888 - 10530 mRNA_2162 0.12 -0.3
223,940 - 10530 mRNA_2162 0.14 1.4
224,138 + 10530 mRNA_2162 0.22 2.5
224,421 + 10530 mRNA_2162 0.34 -0.6
225,017 - 10530 mRNA_2162 0.59 0.5
225,766 + -0.6
225,888 - 1.7
225,920 + -0.4
226,067 - 1.9
226,080 - -0.0
226,221 + 1.2