Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2140

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2139: 10507 - K09377 CSRP cysteine and glycine-rich protein, at 161377 to 162483 10507 mRNA_2140: 10508 - HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383, at 162925 to 174925 10508 mRNA_2141: 10509 - SUPERFAMILY--SSF52047, at 175857 to 177524 10509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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162,252 - 10507 mRNA_2139 0.79 -0.3
162,338 - 10507 mRNA_2139 0.87 -0.2
162,894 - 0.1
163,472 + 0.6
163,555 - -0.1
163,779 - -0.1
163,807 - -0.5
163,980 + 1.0
164,585 - 10508 mRNA_2140 0.14 -0.5
164,841 + 10508 mRNA_2140 0.16 0.0
165,110 - 10508 mRNA_2140 0.18 -0.8
165,110 - 10508 mRNA_2140 0.18 0.5
165,110 - 10508 mRNA_2140 0.18 0.8
165,145 + 10508 mRNA_2140 0.18 -0.6
165,319 + 10508 mRNA_2140 0.20 0.5
165,614 + 10508 mRNA_2140 0.22 -0.0
165,776 + 10508 mRNA_2140 0.24 1.3
165,904 + 10508 mRNA_2140 0.25 0.7
166,194 + 10508 mRNA_2140 0.27 1.5
166,194 - 10508 mRNA_2140 0.27 -1.1
166,197 - 10508 mRNA_2140 0.27 0.5
166,272 + 10508 mRNA_2140 0.28 1.0
166,491 + 10508 mRNA_2140 0.30 0.8
166,652 + 10508 mRNA_2140 0.31 0.8
166,896 + 10508 mRNA_2140 0.33 1.1
167,275 - 10508 mRNA_2140 0.36 1.3
167,312 - 10508 mRNA_2140 0.37 1.3
167,392 + 10508 mRNA_2140 0.37 -0.0
167,402 + 10508 mRNA_2140 0.37 0.8
167,483 - 10508 mRNA_2140 0.38 -0.5
167,579 + 10508 mRNA_2140 0.39 0.6
167,711 - 10508 mRNA_2140 0.40 0.2
167,711 - 10508 mRNA_2140 0.40 -0.2
167,732 + 10508 mRNA_2140 0.40 -0.7
167,867 - 10508 mRNA_2140 0.41 0.3
167,883 - 10508 mRNA_2140 0.41 0.8
167,989 - 10508 mRNA_2140 0.42 -0.3
168,031 + 10508 mRNA_2140 0.43 1.9
168,186 + 10508 mRNA_2140 0.44 0.2
168,499 + 10508 mRNA_2140 0.46 -0.9
168,552 - 10508 mRNA_2140 0.47 0.8
169,160 + 10508 mRNA_2140 0.52 -0.3
169,189 + 10508 mRNA_2140 0.52 -1.3
169,340 - 10508 mRNA_2140 0.53 0.5
169,352 + 10508 mRNA_2140 0.54 -0.2
169,614 - 10508 mRNA_2140 0.56 2.8
169,625 + 10508 mRNA_2140 0.56 1.5
169,890 - 10508 mRNA_2140 0.58 -0.9
169,925 - 10508 mRNA_2140 0.58 0.4
170,046 + 10508 mRNA_2140 0.59 -0.4
170,318 + 10508 mRNA_2140 0.62 -0.4
170,330 + 10508 mRNA_2140 0.62 -0.9
170,740 - 10508 mRNA_2140 0.65 0.9
170,811 - 10508 mRNA_2140 0.66 -0.8
171,257 - 10508 mRNA_2140 0.69 1.2
171,320 + 10508 mRNA_2140 0.70 0.8
171,537 - 10508 mRNA_2140 0.72 1.7
171,648 - 10508 mRNA_2140 0.73 -0.9
171,924 - 10508 mRNA_2140 0.75 0.8
172,010 + 10508 mRNA_2140 0.76 -0.7
172,136 - 10508 mRNA_2140 0.77 -1.0
172,187 - 10508 mRNA_2140 0.77 -0.2
172,192 - 10508 mRNA_2140 0.77 -0.2
172,205 + 10508 mRNA_2140 0.77 0.6
172,411 - 10508 mRNA_2140 0.79 1.2
172,527 + 10508 mRNA_2140 0.80 0.8
172,764 - 10508 mRNA_2140 0.82 -0.2
172,983 - 10508 mRNA_2140 0.84 0.2
173,030 + 10508 mRNA_2140 0.84 0.7
173,113 + 10508 mRNA_2140 0.85 1.6
173,452 - 10508 mRNA_2140 0.88 0.7
173,469 + 10508 mRNA_2140 0.88 1.4
173,687 - 10508 mRNA_2140 0.90 1.2
173,773 - 0.2
173,930 - -0.3
174,050 + -0.2
174,157 - -0.2
174,330 - 2.6
174,606 - -2.0
174,874 + -0.2
175,184 + 0.9
175,216 - 0.6
175,301 + 0.3
175,342 + 1.1
175,351 + 0.0
175,444 - 1.3
175,477 + -0.6
175,477 - 0.1
175,498 + 0.8
175,499 + 2.6
175,609 + 0.3
175,617 - 1.1
175,629 - -0.3
175,639 + 1.4
175,771 - 1.6
175,791 - 2.3
175,921 + -0.3