Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2137

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153030 to 154707 10504 mRNA_2137: 10505 - Hypothetical Protein, at 155364 to 157707 10505 mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157835 to 161101 10506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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154,391 - 10504 mRNA_2136 0.81 0.3
154,446 - 10504 mRNA_2136 0.84 0.6
154,688 - 0.7
154,839 - 0.5
155,435 + 1.2
155,436 - -1.0
155,442 + -1.2
155,451 - 1.4
155,562 - 1.9
155,717 + 10505 mRNA_2137 0.15 0.1
155,975 + 10505 mRNA_2137 0.26 1.6
156,185 + 10505 mRNA_2137 0.35 -0.2
156,307 + 10505 mRNA_2137 0.40 0.0
156,330 - 10505 mRNA_2137 0.41 2.7
156,485 - 10505 mRNA_2137 0.48 -0.9
156,821 - 10505 mRNA_2137 0.62 -1.2
156,977 + 10505 mRNA_2137 0.69 -0.6
157,248 + 10505 mRNA_2137 0.80 0.5
157,542 + 0.3
157,816 + -0.4
157,830 - -0.1
157,835 - -1.7
157,960 - 0.3
158,134 + 2.2
158,137 + 0.2
158,156 - 0.3
158,446 + 10506 mRNA_2138 0.19 -0.2
158,534 - 10506 mRNA_2138 0.21 0.1
158,604 + 10506 mRNA_2138 0.24 -0.4
158,626 + 10506 mRNA_2138 0.24 0.1