Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2116

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107556 to 109708 10483 mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110471 to 111882 10484 mRNA_2117: 10485 - Hypothetical Protein, at 112509 to 114471 10485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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109,492 - 10483 mRNA_2115 0.90 0.4
109,611 + -0.1
109,760 + 0.4
109,901 - -0.2
109,911 - -0.4
109,911 - 0.4
109,974 + -0.9
110,172 + 0.1
110,241 - 1.0
110,480 + 1.6
110,580 + -0.0
110,676 + 10484 mRNA_2116 0.15 1.7
110,807 - 10484 mRNA_2116 0.24 -2.7
111,030 - 10484 mRNA_2116 0.40 -0.5
111,079 + 10484 mRNA_2116 0.43 1.0
111,108 + 10484 mRNA_2116 0.45 1.9
111,129 + 10484 mRNA_2116 0.47 0.6
111,129 - 10484 mRNA_2116 0.47 0.1
111,230 - 10484 mRNA_2116 0.54 2.6
111,256 - 10484 mRNA_2116 0.56 0.3
111,320 + 10484 mRNA_2116 0.60 -0.2
111,361 - 10484 mRNA_2116 0.63 0.2
111,390 - 10484 mRNA_2116 0.65 0.5
111,409 + 10484 mRNA_2116 0.66 0.5
111,410 + 10484 mRNA_2116 0.67 0.2
111,526 + 10484 mRNA_2116 0.75 0.1
111,572 - 10484 mRNA_2116 0.78 2.3
111,636 - 10484 mRNA_2116 0.83 -0.3
111,640 - 10484 mRNA_2116 0.83 1.8
111,649 - 10484 mRNA_2116 0.83 -0.4
111,668 - 10484 mRNA_2116 0.85 -0.1
111,691 + 10484 mRNA_2116 0.86 -1.6
111,726 - 10484 mRNA_2116 0.89 0.2
111,809 - -0.4
112,069 - 0.1
112,087 + -0.1
112,128 - -0.4
112,305 + 2.2
112,306 - 3.4
112,380 - -0.7
112,382 + -1.4
112,384 - -1.1
112,410 - -0.2
112,414 + 1.4
112,435 - 0.6
112,529 - 0.4
112,543 - 0.1
112,649 - -0.5
112,676 - 0.1
112,696 - 0.8