Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2113

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101300 to 102530 10479 mRNA_2112: 10480 - Hypothetical Protein, at 102652 to 103100 10480 mRNA_2113: 10481 - KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors, at 103477 to 104004 10481

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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102,563 - 0.3
102,645 - 0.4
102,702 - 10480 mRNA_2112 0.11 2.3
102,753 - 10480 mRNA_2112 0.22 1.2
102,828 - 10480 mRNA_2112 0.39 0.4
102,957 - 10480 mRNA_2112 0.68 3.0
102,996 - 10480 mRNA_2112 0.77 0.4
102,998 - 10480 mRNA_2112 0.77 0.5
103,015 + 10480 mRNA_2112 0.81 0.4
103,015 + 10480 mRNA_2112 0.81 0.3
103,024 - 10480 mRNA_2112 0.83 -0.8
103,028 + 10480 mRNA_2112 0.84 2.3
103,052 - 10480 mRNA_2112 0.89 1.5
103,129 + 0.3
103,166 + 0.1
103,167 - 1.3
103,171 + 0.6
103,171 - 1.0
103,180 + 0.3
103,182 - 0.2
103,313 + 0.2
103,329 - 1.1
103,348 - -2.2
103,413 + 1.5
103,447 - 0.8
103,477 - 1.3
103,606 + 10481 mRNA_2113 0.24 0.2
103,779 - 10481 mRNA_2113 0.57 0.5
103,956 - -0.2
104,327 + -0.9
104,339 + -0.5
104,374 + -0.7
104,501 - 1.7
104,666 + 1.0
104,920 + 1.1