Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2107

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2106: 10474 - K15710 SHPRH E3 ubiquitin-protein ligase SHPRH, at 86774 to 93150 10474 mRNA_2107: 10475 - K01918 panC pantoate--beta-alanine ligase, at 93856 to 95198 10475 mRNA_2108: 10476 - Hypothetical Protein, at 95420 to 96044 10476

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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92,912 + -0.4
93,027 + -0.1
93,052 - 0.5
93,165 - 1.3
93,174 - -1.8
93,202 - -0.3
93,246 + -1.5
93,343 + 0.8
93,364 + 0.6
93,539 + 2.2
93,807 + 1.4
93,893 - -0.5
93,944 - 2.6
94,085 + 10475 mRNA_2107 0.17 1.3
94,221 - 10475 mRNA_2107 0.27 0.6
94,347 + 10475 mRNA_2107 0.37 2.4
94,387 + 10475 mRNA_2107 0.40 0.3
94,528 + 10475 mRNA_2107 0.50 2.0
94,720 - 10475 mRNA_2107 0.64 -0.1
94,786 - 10475 mRNA_2107 0.69 -0.7
94,811 - 10475 mRNA_2107 0.71 0.1
94,956 - 10475 mRNA_2107 0.82 0.0
95,086 + 0.4
95,088 - -0.8
95,103 + -0.7
95,174 - 1.9
95,347 + -0.5
95,407 - 0.1
95,448 + 0.2
95,631 + 10476 mRNA_2108 0.34 1.2
95,640 - 10476 mRNA_2108 0.35 -0.3
95,959 + 10476 mRNA_2108 0.86 0.2
95,961 - 10476 mRNA_2108 0.87 -1.5
95,971 + 10476 mRNA_2108 0.88 0.9
96,008 - -0.7
96,015 + -0.1
96,107 + -0.5
96,128 - 0.5
96,130 - -0.5
96,144 - -0.8
96,148 + -0.3