Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2077

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14987 to 18739 10444 mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19100 to 20228 10445 mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20466 to 22211 10446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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18,192 - 10444 mRNA_2076 0.85 -0.0
18,548 + 0.3
18,639 + 0.5
18,742 - 2.5
18,860 + 1.6
18,863 - 0.5
18,878 - 1.5
19,094 + 1.3
19,127 - 0.4
19,187 - 0.2
19,313 - 10445 mRNA_2077 0.19 1.2
19,326 - 10445 mRNA_2077 0.20 1.4
19,482 - 10445 mRNA_2077 0.34 -1.6
19,649 - 10445 mRNA_2077 0.49 1.3
19,663 + 10445 mRNA_2077 0.50 -0.2
19,676 - 10445 mRNA_2077 0.51 1.1
19,761 + 10445 mRNA_2077 0.59 0.8
19,762 + 10445 mRNA_2077 0.59 0.1
19,949 - 10445 mRNA_2077 0.75 1.1
20,094 - 10445 mRNA_2077 0.88 0.7
20,094 - 10445 mRNA_2077 0.88 0.3
20,100 + 10445 mRNA_2077 0.89 -1.3
20,100 + 10445 mRNA_2077 0.89 -0.0
20,306 + -0.1
20,419 + -0.2
20,794 - 10446 mRNA_2078 0.19 -1.2
20,866 - 10446 mRNA_2078 0.23 0.1
21,016 - 10446 mRNA_2078 0.32 0.2
21,051 + 10446 mRNA_2078 0.34 1.3
21,120 - 10446 mRNA_2078 0.37 -0.2
21,148 - 10446 mRNA_2078 0.39 -0.9