Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2054

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842019 to 844467 10421 mRNA_2054: 10422 - KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains, at 844662 to 846096 10422 mRNA_2055: 10423 - KOG2817 Predicted E3 ubiquitin ligase, at 846243 to 848116 10423

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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843,684 + 10421 mRNA_2053 0.68 2.4
843,718 - 10421 mRNA_2053 0.69 0.9
843,831 - 10421 mRNA_2053 0.74 -2.1
843,880 - 10421 mRNA_2053 0.76 -0.0
843,892 + 10421 mRNA_2053 0.76 0.3
843,970 + 10421 mRNA_2053 0.80 0.7
843,995 + 10421 mRNA_2053 0.81 0.2
843,997 - 10421 mRNA_2053 0.81 1.3
844,178 + 10421 mRNA_2053 0.88 0.2
844,335 - 0.2
844,411 - -1.4
844,427 + -0.7
844,585 - 1.3
844,585 - 0.7
844,594 + 0.4
844,733 - 0.4
844,737 - -0.5
844,774 + 1.7
844,794 + -2.0
844,855 + 10422 mRNA_2054 0.13 1.7
844,990 + 10422 mRNA_2054 0.23 0.2
845,190 + 10422 mRNA_2054 0.37 0.0
845,735 - 10422 mRNA_2054 0.75 1.1
845,780 - 10422 mRNA_2054 0.78 -0.1
845,825 - 10422 mRNA_2054 0.81 0.7
845,846 - 10422 mRNA_2054 0.83 0.4
845,914 + 10422 mRNA_2054 0.87 0.8
846,030 - 1.3
846,080 - -0.0
846,084 + 0.1
846,190 - 0.6
846,275 + 0.7
846,368 - 0.4
846,545 - 10423 mRNA_2055 0.16 0.2
846,545 + 10423 mRNA_2055 0.16 3.7
846,672 + 10423 mRNA_2055 0.23 1.0
846,935 - 10423 mRNA_2055 0.37 2.1
846,940 + 10423 mRNA_2055 0.37 -0.3