Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2009

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731652 to 732253 10376 mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733101 to 734076 10377 mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734428 to 736399 10378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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732,813 - 2.4
732,826 - 0.4
732,998 + 0.6
733,365 + 10377 mRNA_2009 0.27 1.6
733,388 - 10377 mRNA_2009 0.29 0.9
733,634 + 10377 mRNA_2009 0.55 -0.5
733,681 - 10377 mRNA_2009 0.59 0.2
733,788 - 10377 mRNA_2009 0.70 2.1
734,465 - -0.1
734,623 - 0.4
734,692 - 10378 mRNA_2010 0.13 1.2