Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1987

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1986: 10354 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 673978 to 676416 10354 mRNA_1987: 10355 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 677107 to 679198 10355 mRNA_1988: 10356 - KOG1674 Cyclin, at 679258 to 681059 10356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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676,428 - 1.4
676,566 - 0.8
676,605 + 0.1
676,729 - 0.9
676,834 - -0.2
676,890 + 0.1
677,009 - 2.0
677,173 - -0.4
677,187 + 0.2
677,320 - 10355 mRNA_1987 0.10 -0.6
677,670 - 10355 mRNA_1987 0.27 0.8
677,788 + 10355 mRNA_1987 0.33 0.3
678,779 - 10355 mRNA_1987 0.80 -0.3
678,981 - 10355 mRNA_1987 0.90 2.2
679,171 + 2.1
679,198 + -0.1
679,209 + 1.9
679,414 - -0.2
679,455 - 10356 mRNA_1988 0.11 0.9
679,691 + 10356 mRNA_1988 0.24 1.2
679,760 - 10356 mRNA_1988 0.28 0.7
679,773 - 10356 mRNA_1988 0.29 0.7
679,997 + 10356 mRNA_1988 0.41 -0.4
680,108 - 10356 mRNA_1988 0.47 0.6
680,124 - 10356 mRNA_1988 0.48 -0.0
680,131 + 10356 mRNA_1988 0.48 -0.0
680,198 + 10356 mRNA_1988 0.52 2.5