Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1975

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650254 to 651223 10342 mRNA_1975: 10343 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 651585 to 654888 10343 mRNA_1976: 10344 - Hypothetical Protein, at 655294 to 656131 10344

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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650,995 - 10342 mRNA_1974 0.76 -0.3
651,120 + 10342 mRNA_1974 0.89 -0.5
651,143 + 1.3
651,151 + 0.5
651,151 - 2.6
651,151 - 0.9
651,168 - -0.6
651,329 - -0.2
651,333 - 0.6
651,334 + 0.5
651,341 - -0.1
651,347 - -1.8
651,487 + 0.5
651,619 + -0.5
651,654 + -0.0
651,793 + 1.0
651,924 - 10343 mRNA_1975 0.10 -1.6
652,023 + 10343 mRNA_1975 0.13 0.0
652,048 - 10343 mRNA_1975 0.14 -0.2
652,151 - 10343 mRNA_1975 0.17 0.6
653,068 - 10343 mRNA_1975 0.45 0.4
653,157 + 10343 mRNA_1975 0.48 -0.3
653,497 + 10343 mRNA_1975 0.58 -0.5
653,657 + 10343 mRNA_1975 0.63 1.4
653,661 - 10343 mRNA_1975 0.63 1.3
654,309 + 10343 mRNA_1975 0.82 -0.5
654,315 - 10343 mRNA_1975 0.83 -2.4
654,348 - 10343 mRNA_1975 0.84 1.1
654,624 - -0.6
654,656 - 0.8
654,920 + 0.5
655,205 + 1.0
655,376 - -0.3
655,501 - 10344 mRNA_1976 0.25 1.1