Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1971

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642692 to 644646 10339 mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645186 to 645812 10340

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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641,693 - 1.1
641,693 - -0.0
641,698 + 1.2
641,702 + -0.1
641,703 - -0.3
641,707 + 0.9
641,708 + -0.2
641,711 - 0.2
641,763 - 0.9
641,769 + -1.0
641,803 + 0.3
641,815 + 0.0
641,831 - 1.2
641,854 - -0.3
641,865 - 2.9
641,887 - 0.1
641,904 + -0.3
641,908 - -1.8
641,946 - -0.6
641,949 + 0.4
641,971 - 0.2
641,988 + 0.1
641,995 + -0.4
641,996 + -1.0
642,001 + -1.6
642,019 - 2.0
642,026 - 1.1
642,027 - -0.1
642,033 - -0.9
642,037 + -0.6
642,037 - 1.5
642,039 + 0.6
642,049 + -0.4
642,071 + -0.1
642,091 - 1.9
642,092 + 1.7
642,174 - 0.3
642,188 - 0.4
642,189 + -1.2
642,190 + 1.6
642,198 - 0.4
642,204 + 1.4
642,208 + -0.0
642,209 - -1.3
642,217 + -0.2
642,220 + 0.1
642,222 + -0.3
642,229 + 0.9
642,248 - -0.4
642,279 - -0.7
642,294 - 0.9
642,296 - 0.2
642,301 - 0.0
642,307 + 0.8
642,319 + 0.4
642,331 + 0.1
642,339 + 0.3
642,344 - 0.4
642,349 + -0.5
642,359 - -0.3
642,367 - -0.2
642,379 - 1.7
642,381 + -1.2
642,385 + -0.1
642,390 + 0.6
642,393 - -0.2
642,396 + 0.2
642,396 - 1.8
642,407 - 0.3
642,411 - 0.1
642,419 + -0.0
642,426 - 1.5
642,436 - 0.5
642,441 + 0.4
642,445 - 2.3
642,448 - 1.2
642,452 + -0.1
642,453 - -0.6
642,490 + 0.8
642,550 - -0.4
642,579 + 0.2
642,610 - 0.3
642,931 - 10339 mRNA_1971 0.12 0.3
643,292 + 10339 mRNA_1971 0.31 0.9
643,761 - 10339 mRNA_1971 0.55 0.4
643,783 - 10339 mRNA_1971 0.56 0.8
644,298 - 10339 mRNA_1971 0.82 1.2
644,317 + 10339 mRNA_1971 0.83 2.3