Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1961

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1960: 10328 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 613593 to 615935 10328 mRNA_1961: 10329 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140, at 616368 to 617254 10329 mRNA_1962: 10330 - K00133 asd aspartate-semialdehyde dehydrogenase, at 617594 to 618818 10330

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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615,546 - 10328 mRNA_1960 0.83 0.0
615,671 + 10328 mRNA_1960 0.89 0.9
615,691 + 10328 mRNA_1960 0.90 0.1
615,973 + -0.4
616,087 - 0.6
616,101 + -0.7
616,108 + 1.6
616,379 + -0.4
616,380 - 0.5
616,383 - 1.9
616,389 - -0.2
616,398 - 0.6
616,406 + 0.1
616,433 - -0.3
616,532 + 10329 mRNA_1961 0.18 0.3
616,691 - 10329 mRNA_1961 0.36 0.5