Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1943

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310 mRNA_1943: 10311 - Hypothetical Protein, at 571138 to 572203 10311 mRNA_1944: 10312 - BLAST Respiratory supercomplex factor 2, mitochondrial [Cla..., at 572594 to 573767 10312

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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570,203 - 10310 mRNA_1942 0.80 2.2
570,702 - 0.4
570,794 - -2.3
570,929 - -0.1
571,211 + -0.6
571,258 + 10311 mRNA_1943 0.11 -1.8
571,348 - 10311 mRNA_1943 0.20 0.3
571,417 - 10311 mRNA_1943 0.26 1.7
571,420 - 10311 mRNA_1943 0.26 1.2
571,492 - 10311 mRNA_1943 0.33 -0.6
571,496 - 10311 mRNA_1943 0.34 1.6
571,499 + 10311 mRNA_1943 0.34 -0.1
571,638 + 10311 mRNA_1943 0.47 1.1
571,785 - 10311 mRNA_1943 0.61 0.4
571,854 - 10311 mRNA_1943 0.67 0.3
571,924 + 10311 mRNA_1943 0.74 0.2
571,930 - 10311 mRNA_1943 0.74 -1.9
571,979 - 10311 mRNA_1943 0.79 1.1
572,061 - 10311 mRNA_1943 0.87 -0.4
572,098 - -0.5
572,114 + -0.3
572,230 - 0.1
572,257 + -0.1
572,384 - -1.3
572,397 + 1.4
572,400 + 0.7
572,511 - 0.5
572,541 - -0.3
572,560 + 1.5
572,685 - -0.4
572,940 - 10312 mRNA_1944 0.29 0.7
572,974 - 10312 mRNA_1944 0.32 -0.3
573,040 + 10312 mRNA_1944 0.38 0.5
573,063 + 10312 mRNA_1944 0.40 1.8
573,132 - 10312 mRNA_1944 0.46 -0.2