Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1895

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1894: 10262 - K01253 EPHX1 microsomal epoxide hydrolase, at 450582 to 452258 10262 mRNA_1895: 10263 - K09247 CYP1, HAP1 heme activator protein 1, at 452374 to 455740 10263 mRNA_1896: 10264 - K00844 HK hexokinase, at 456239 to 458071 10264

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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451,387 + 10262 mRNA_1894 0.48 0.0
451,550 + 10262 mRNA_1894 0.58 0.1
451,556 - 10262 mRNA_1894 0.58 -0.3
451,662 + 10262 mRNA_1894 0.64 0.0
451,834 + 10262 mRNA_1894 0.75 1.6
452,384 + 1.0
452,396 - -0.8
452,559 + -0.5
453,103 - 10263 mRNA_1895 0.22 -0.5
453,174 + 10263 mRNA_1895 0.24 -1.1
453,401 - 10263 mRNA_1895 0.31 -0.9
453,700 + 10263 mRNA_1895 0.39 -0.6
453,719 + 10263 mRNA_1895 0.40 -0.4
453,849 - 10263 mRNA_1895 0.44 -1.8
453,856 + 10263 mRNA_1895 0.44 0.1
453,867 + 10263 mRNA_1895 0.44 -0.8
453,911 + 10263 mRNA_1895 0.46 -0.7
453,925 + 10263 mRNA_1895 0.46 -1.6
454,020 + 10263 mRNA_1895 0.49 -0.7
454,183 + 10263 mRNA_1895 0.54 0.4
454,437 - 10263 mRNA_1895 0.61 -0.4
455,094 - 10263 mRNA_1895 0.81 1.0
455,191 - 10263 mRNA_1895 0.84 -0.4
455,244 - 10263 mRNA_1895 0.85 0.3
455,321 - 10263 mRNA_1895 0.88 -1.0
455,622 - -1.9
455,627 + -0.1
455,637 + 0.6
455,645 + 1.4
455,656 + -0.4
455,776 - -0.2
455,798 - 0.1
455,824 + 1.8
455,922 - 2.8
455,934 - 1.6
455,950 - -0.3
455,955 + -0.3
455,955 + -0.5
455,957 + 0.2
455,963 + 0.2
455,968 + 0.9
455,968 + 1.4
455,970 - -0.1
456,078 - 0.2
456,098 - -0.3
456,102 - 0.9
456,122 + -1.5
456,226 - 0.4
456,243 + 0.1
456,264 - -3.3
456,393 - -0.9
456,408 - -1.8
456,524 + 10264 mRNA_1896 0.16 0.2
456,533 - 10264 mRNA_1896 0.16 -0.3
456,538 - 10264 mRNA_1896 0.16 0.2
456,546 + 10264 mRNA_1896 0.17 1.1
456,549 + 10264 mRNA_1896 0.17 1.0
456,550 + 10264 mRNA_1896 0.17 -0.2
456,558 + 10264 mRNA_1896 0.17 -0.8
456,564 + 10264 mRNA_1896 0.18 -0.9
456,583 - 10264 mRNA_1896 0.19 -0.7