Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1884

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430168 to 431962 10251 mRNA_1884: 10252 - Hypothetical Protein, at 432578 to 433282 10252 mRNA_1885: 10253 - KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family), at 433544 to 436141 10253

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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431,699 - 10251 mRNA_1883 0.85 1.7
431,738 + 10251 mRNA_1883 0.87 0.8
431,792 - -0.6
431,806 - 0.8
431,826 - -2.3
431,829 - 1.7
431,845 - 1.3
431,866 + 3.0
431,866 + 0.4
431,982 + -0.1
431,982 + -0.6
431,990 - 0.4
431,997 - -1.5
431,998 + 0.2
432,006 - 2.5
432,011 + 0.3
432,023 + 0.5
432,036 + 0.1
432,054 + 2.2
432,066 - 0.0
432,067 + 1.3
432,085 - -0.2
432,116 + -0.4
432,123 - 1.3
432,124 + -0.2
432,134 - -0.9
432,134 - 0.3
432,134 - 1.5
432,137 - -0.0
432,143 + -0.9
432,147 - 1.2
432,147 - 0.8
432,157 + 0.7
432,160 + 0.1
432,162 - -0.2
432,165 + -0.1
432,165 - 0.0
432,165 + 0.3
432,185 - 0.5
432,188 - -0.6
432,190 + 0.2
432,197 + 0.9
432,203 - -0.3
432,230 + -0.5
432,234 - 0.1
432,317 + -0.2
432,335 + 0.7
432,370 - 2.6
432,378 - -0.0
432,379 - 1.0
432,387 - 0.4
432,390 + 1.5
432,391 - 0.2
432,391 - 1.6
432,398 - -0.1
432,407 + -0.2
432,425 - 0.8
432,436 + -0.2
432,442 + -0.8
432,444 - 0.6
432,450 - 2.0
432,451 - -0.5
432,451 + -0.8
432,458 + 0.7
432,461 + 1.3
432,483 - 0.6
432,483 + -0.7
432,489 - 0.3
432,499 + 0.5
432,500 - -0.6
432,501 + 0.6
432,507 + -0.1
432,594 + -0.2
432,744 - 10252 mRNA_1884 0.24 0.2
432,781 - 10252 mRNA_1884 0.29 -0.0
432,934 + 10252 mRNA_1884 0.50 -0.0
433,043 - 10252 mRNA_1884 0.66 0.6
433,088 + 10252 mRNA_1884 0.72 0.7
433,196 - 10252 mRNA_1884 0.88 0.4
433,197 - 10252 mRNA_1884 0.88 0.4
433,214 + 0.3
433,265 + 1.8
433,799 + 0.4
434,085 - 10253 mRNA_1885 0.21 1.8
434,117 + 10253 mRNA_1885 0.22 0.4
434,134 - 10253 mRNA_1885 0.23 -0.3