Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1883

Experiments: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428761 to 429844 10250 mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430168 to 431962 10251 mRNA_1884: 10252 - Hypothetical Protein, at 432578 to 433282 10252

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
430,062 + -0.1
430,062 - 0.4
430,063 - 1.3
430,068 - 0.1
430,069 + -0.5
430,072 + 0.6
430,138 - 0.8
430,206 - 0.5
430,213 - 2.2
430,218 + 1.0
430,635 - 10251 mRNA_1883 0.26 0.5
430,649 + 10251 mRNA_1883 0.27 0.7
430,830 - 10251 mRNA_1883 0.37 1.4
430,848 - 10251 mRNA_1883 0.38 0.8
430,935 - 10251 mRNA_1883 0.43 -1.5
430,982 + 10251 mRNA_1883 0.45 1.1
431,077 + 10251 mRNA_1883 0.51 -0.3
431,514 - 10251 mRNA_1883 0.75 1.1
431,546 + 10251 mRNA_1883 0.77 -0.1
431,699 - 10251 mRNA_1883 0.85 1.7
431,738 + 10251 mRNA_1883 0.87 0.8
431,792 - -0.6
431,806 - 0.8
431,826 - -2.3
431,829 - 1.7
431,845 - 1.3
431,866 + 3.0
431,866 + 0.4
431,982 + -0.1
431,982 + -0.6
431,990 - 0.4
431,997 - -1.5
431,998 + 0.2
432,006 - 2.5
432,011 + 0.3
432,023 + 0.5
432,036 + 0.1
432,054 + 2.2
432,066 - 0.0
432,067 + 1.3
432,085 - -0.2
432,116 + -0.4
432,123 - 1.3
432,124 + -0.2
432,134 - -0.9
432,134 - 0.3
432,134 - 1.5
432,137 - -0.0
432,143 + -0.9
432,147 - 1.2
432,147 - 0.8
432,157 + 0.7
432,160 + 0.1
432,162 - -0.2
432,165 + -0.1
432,165 - 0.0
432,165 + 0.3
432,185 - 0.5
432,188 - -0.6
432,190 + 0.2
432,197 + 0.9
432,203 - -0.3
432,230 + -0.5
432,234 - 0.1
432,317 + -0.2
432,335 + 0.7
432,370 - 2.6
432,378 - -0.0
432,379 - 1.0
432,387 - 0.4
432,390 + 1.5
432,391 - 0.2
432,391 - 1.6
432,398 - -0.1
432,407 + -0.2
432,425 - 0.8
432,436 + -0.2
432,442 + -0.8
432,444 - 0.6
432,450 - 2.0
432,451 - -0.5
432,451 + -0.8
432,458 + 0.7
432,461 + 1.3
432,483 - 0.6
432,483 + -0.7
432,489 - 0.3
432,499 + 0.5
432,500 - -0.6
432,501 + 0.6
432,507 + -0.1
432,594 + -0.2
432,744 - 10252 mRNA_1884 0.24 0.2
432,781 - 10252 mRNA_1884 0.29 -0.0
432,934 + 10252 mRNA_1884 0.50 -0.0