Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1864

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1863: 10231 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 396893 to 397973 10231 mRNA_1864: 10232 - SUPERFAMILY--SSF53300, at 398356 to 399523 10232 mRNA_1865: 10233 - K02729 PSMA5 20S proteasome subunit alpha 5, at 399738 to 401124 10233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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397,370 - 10231 mRNA_1863 0.44 -0.7
397,669 + 10231 mRNA_1863 0.72 0.4
397,787 - 10231 mRNA_1863 0.83 -0.3
397,965 + -0.3
397,972 - 0.1
397,980 - 0.4
397,988 - 0.1
398,095 + -0.3
398,105 - -0.2
398,116 + -2.7
398,117 - 0.2
398,119 + 0.8
398,134 + -1.9
398,172 + 0.1
398,299 + 1.5
398,527 + 10232 mRNA_1864 0.15 2.8
398,694 + 10232 mRNA_1864 0.29 1.3
398,720 - 10232 mRNA_1864 0.31 0.4
399,619 + 1.4
399,626 + 0.5
399,631 + 1.8
399,697 - -0.0