Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1856

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380959 to 382150 10223 mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224 mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383950 to 386547 10225

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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381,408 + 10223 mRNA_1855 0.38 0.4
381,436 - 10223 mRNA_1855 0.40 0.5
381,703 + 10223 mRNA_1855 0.62 -0.8
381,707 + 10223 mRNA_1855 0.63 0.9
381,710 - 10223 mRNA_1855 0.63 0.6
381,883 + 10223 mRNA_1855 0.78 0.4
381,909 + 10223 mRNA_1855 0.80 2.0
382,332 + -0.6
382,440 - -0.7
382,465 - 1.5
382,478 + 10224 mRNA_1856 0.11 0.1
382,605 + 10224 mRNA_1856 0.20 -0.7
383,428 - 10224 mRNA_1856 0.82 0.3
383,454 - 10224 mRNA_1856 0.84 0.1
383,459 - 10224 mRNA_1856 0.85 0.9
383,753 - -0.2
383,946 - -0.0
384,191 + -1.7
384,504 - 10225 mRNA_1857 0.21 -0.4
384,513 + 10225 mRNA_1857 0.22 -0.2