Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1832

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1831: 10199 - KOG3274 Uncharacterized conserved protein, AMMECR1, at 318985 to 319920 10199 mRNA_1832: 10200 - K11188 PRDX6 peroxiredoxin 6, 1-Cys peroxiredoxin, at 320371 to 321858 10200 mRNA_1833: 10201 - Hypothetical Protein, at 322426 to 322877 10201

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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319,554 + 10199 mRNA_1831 0.61 1.8
319,679 + 10199 mRNA_1831 0.74 -0.3
319,841 - -0.7
319,843 - -0.2
319,925 + 0.4
319,982 - -0.8
319,989 - 0.5
319,991 + 0.6
319,991 + -0.5
320,002 - -0.3
320,003 - -0.8
320,008 + 2.3
320,038 + 0.4
320,043 + 1.2
320,069 + -0.1
320,088 - -2.2
320,094 - 0.1
320,105 + 0.9
320,111 - -0.1
320,111 + 1.8
320,118 + -0.6
320,126 + 1.1
320,133 - 0.7
320,136 - 0.7
320,136 - 0.0
320,137 + -0.3
320,139 - 1.6
320,140 + 0.4
320,141 - 0.0
320,143 - -0.5
320,149 - 1.2
320,166 + 0.9
320,288 + 0.2
320,310 + -0.2
320,871 + 10200 mRNA_1832 0.34 0.3
320,916 - 10200 mRNA_1832 0.37 0.0
321,001 - 10200 mRNA_1832 0.42 0.4
321,041 - 10200 mRNA_1832 0.45 -0.6
321,047 + 10200 mRNA_1832 0.45 2.4
321,889 + 0.1
321,904 + 0.1
321,916 - 0.8
321,925 - 0.3
321,942 - 1.5
321,998 + 0.2
322,017 - 0.7
322,028 - -0.3
322,028 - -0.1
322,033 + -0.1
322,046 + -0.2
322,047 + 0.1
322,153 - 0.7
322,181 + 0.0
322,184 + 0.2
322,191 + -0.3
322,194 + 0.0
322,194 + 1.0
322,224 + 0.8
322,235 - -0.5
322,329 - 1.7
322,334 + 0.4
322,481 - 10201 mRNA_1833 0.12 0.2