Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1822

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291714 to 294112 10189 mRNA_1822: 10190 - KOG0627 Heat shock transcription factor, at 294810 to 296545 10190

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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293,854 - 10189 mRNA_1821 0.89 -0.3
293,983 - 0.1
294,137 - 1.5
294,190 - 1.5
294,407 - -1.0
294,410 + -0.6
294,451 + 1.5
294,562 - 0.9
295,045 - 10190 mRNA_1822 0.14 -1.9
295,911 + 10190 mRNA_1822 0.63 1.5
295,949 + 10190 mRNA_1822 0.66 -1.2
296,067 - 10190 mRNA_1822 0.72 -0.5
296,194 - 10190 mRNA_1822 0.80 1.5
296,212 - 10190 mRNA_1822 0.81 -0.0
296,230 - 10190 mRNA_1822 0.82 0.1
296,234 - 10190 mRNA_1822 0.82 0.8
296,277 - 10190 mRNA_1822 0.85 2.2
296,286 - 10190 mRNA_1822 0.85 0.8
296,389 + 0.6
296,395 - -0.6
296,396 - -0.2
296,423 + 2.0
296,533 + 0.9
296,535 + -0.1
296,539 + 1.5
296,554 + 0.0
296,554 - -0.1
296,557 - 2.1
296,568 + 0.1
296,581 - 0.4
296,601 + 1.3
296,693 + 0.6
296,707 - -0.8
296,708 + 0.3
296,718 + -1.2
296,720 + -0.3
296,728 - 0.1
296,738 + -0.3
296,743 + 0.4
296,744 + 0.7
296,745 - 0.7
296,752 + 0.2
296,756 + 0.2
296,760 - 0.1
296,763 + 0.6
296,763 + -1.1
296,800 - -0.2
296,868 - -0.6
296,874 - -0.4
296,876 - 0.4
296,879 + 3.3
296,879 + -0.1
296,883 - -0.1
296,885 - 0.9
296,893 - 1.2
297,020 + 0.2
297,036 + 1.2
297,049 + 0.5
297,082 - 0.3
297,086 + -0.2
297,088 + 0.5
297,089 + -1.6
297,110 + 0.6
297,113 + 0.4
297,132 - 0.5
297,133 + 1.2
297,144 - 0.2
297,149 + 1.3
297,153 - 0.3
297,156 + 0.3
297,157 - -0.0
297,158 - 1.7
297,164 - -0.7
297,195 - -0.3
297,206 - 1.0
297,207 + 0.3
297,209 - 0.6
297,209 + 2.0
297,210 + -0.4
297,213 - 1.3
297,229 + 0.5
297,257 - 0.2
297,267 + 0.4
297,305 + -0.1
297,329 - 0.2
297,340 + 1.8
297,344 - 0.4
297,371 - -0.2
297,379 + 0.4
297,389 + 1.3
297,392 + -0.6
297,490 + 0.3
297,509 - 0.6
297,514 + 0.3
297,541 - -0.3