Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1802

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1801: 10169 - HMMPfam-Survival motor neuron (SMN) interacting protein 1 (SIP1)-PF04938, at 231185 to 232547 10169 mRNA_1802: 10170 - K05546 GANAB alpha 1,3-glucosidase, at 232622 to 238014 10170 mRNA_1803: 10171 - K15205 TFC6 transcription factor C subunit 6, at 238307 to 241610 10171

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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232,772 - 0.0
232,802 - -0.1
232,814 + -0.1
233,400 - 10170 mRNA_1802 0.14 -0.0
233,489 - 10170 mRNA_1802 0.16 -0.2
233,511 + 10170 mRNA_1802 0.16 0.1
233,561 - 10170 mRNA_1802 0.17 -0.1
234,402 - 10170 mRNA_1802 0.33 1.0
234,419 + 10170 mRNA_1802 0.33 -0.6
234,709 - 10170 mRNA_1802 0.39 -0.6
234,715 + 10170 mRNA_1802 0.39 -0.4
234,817 - 10170 mRNA_1802 0.41 -0.5
234,834 + 10170 mRNA_1802 0.41 0.6
235,419 + 10170 mRNA_1802 0.52 0.7
235,801 - 10170 mRNA_1802 0.59 0.2
236,293 + 10170 mRNA_1802 0.68 0.7
236,670 + 10170 mRNA_1802 0.75 -1.1
236,773 + 10170 mRNA_1802 0.77 -1.2
236,876 - 10170 mRNA_1802 0.79 -1.5
237,073 - 10170 mRNA_1802 0.83 1.3
237,759 + -0.2
237,930 - 0.1
238,197 - 0.1
238,304 - -1.5