Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1800

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226927 to 229515 10167 mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229665 to 231047 10168 mRNA_1801: 10169 - HMMPfam-Survival motor neuron (SMN) interacting protein 1 (SIP1)-PF04938, at 231185 to 232547 10169

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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228,707 + 10167 mRNA_1799 0.69 0.1
228,859 - 10167 mRNA_1799 0.75 2.4
228,970 - 10167 mRNA_1799 0.79 1.6
229,001 + 10167 mRNA_1799 0.80 -0.1
229,128 - 10167 mRNA_1799 0.85 -1.0
229,129 + 10167 mRNA_1799 0.85 0.1
229,129 - 10167 mRNA_1799 0.85 1.0
229,148 + 10167 mRNA_1799 0.86 -0.1
229,265 - -0.1
229,415 + 0.7
229,417 + 0.7
229,420 + -1.1
229,438 + 0.2
229,443 + 2.8
229,467 - 0.8
229,467 - 0.1
229,470 + -0.6
229,473 - 0.6
229,475 - 1.2
229,476 - 0.0
229,476 - 0.1
229,481 - 1.9
229,481 + 0.8
229,482 - 1.4
229,487 + 0.3
229,488 + 0.5
229,492 + 0.5
229,492 + -0.7
229,505 + 2.7
229,511 + -0.1
229,613 - 1.3
229,618 + 0.9
229,626 + -0.0
229,627 - 0.2
229,628 + 0.4
229,628 - -1.0
229,635 + 1.1
229,662 + 0.5
229,667 - -1.0
229,786 - 1.2
229,786 + 0.3
229,910 - 10168 mRNA_1800 0.18 1.7
230,079 - 10168 mRNA_1800 0.30 -0.4
230,084 + 10168 mRNA_1800 0.30 0.1
230,215 + 10168 mRNA_1800 0.40 1.2
230,335 + 10168 mRNA_1800 0.48 -0.0
230,398 - 10168 mRNA_1800 0.53 -0.3
230,489 + 10168 mRNA_1800 0.60 -0.1
230,489 + 10168 mRNA_1800 0.60 -1.1
230,941 + -0.0
231,134 - -0.7
231,148 + 0.4
231,148 + 0.6
231,154 + 0.4
231,163 + 0.8
231,185 - -0.2