Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1788

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1787: 10155 - HMMPfam-Tctex-1 family-PF03645, at 207900 to 208690 10155 mRNA_1788: 10156 - K16368 DGK1 diacylglycerol kinase (CTP), at 208859 to 210446 10156 mRNA_1789: 10157 - K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A, at 210969 to 211922 10157

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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208,042 - 10155 mRNA_1787 0.18 1.9
208,176 - 10155 mRNA_1787 0.35 2.3
208,349 - 10155 mRNA_1787 0.57 -0.2
208,476 - 10155 mRNA_1787 0.73 1.7
208,780 + 2.4
208,781 - -0.1
208,788 - -0.6
208,794 - -0.8
208,799 - -0.6
208,808 + -0.0
208,929 - -0.0
208,956 - -0.9
209,078 + 10156 mRNA_1788 0.14 -0.2
209,128 - 10156 mRNA_1788 0.17 0.9
209,232 - 10156 mRNA_1788 0.23 0.6
209,245 + 10156 mRNA_1788 0.24 0.8
209,313 + 10156 mRNA_1788 0.29 1.3
209,527 + 10156 mRNA_1788 0.42 -0.2
209,563 - 10156 mRNA_1788 0.44 -0.3
209,970 + 10156 mRNA_1788 0.70 1.9
209,981 - 10156 mRNA_1788 0.71 -1.7
209,986 - 10156 mRNA_1788 0.71 -0.5
210,123 - 10156 mRNA_1788 0.80 0.5
210,398 - -1.7
210,545 - -0.5
210,546 + -0.5
210,717 + 0.5
210,965 + 0.1