Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1721

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088 mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34875 to 37390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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31,450 - 10088 mRNA_1720 0.79 -0.2
31,473 + 10088 mRNA_1720 0.79 1.7
31,607 + 10088 mRNA_1720 0.84 0.0
31,620 - 10088 mRNA_1720 0.85 1.1
31,762 + 10088 mRNA_1720 0.90 -0.4
31,878 - 0.1
32,031 - 3.0
32,173 + 0.7
32,190 - 0.7
32,333 + -0.9
32,336 - 1.2
32,337 - -1.2
32,350 + 0.2
32,350 - 1.8
32,354 + 1.3
32,355 - 0.7
32,356 + 0.1
32,357 + -1.0
32,362 + -1.3
32,547 - 0.2
32,588 + 0.0
32,822 - 10089 mRNA_1721 0.21 0.1
32,823 - 10089 mRNA_1721 0.21 1.9
32,873 - 10089 mRNA_1721 0.23 0.3
33,180 - 10089 mRNA_1721 0.39 1.8
33,187 + 10089 mRNA_1721 0.40 1.1
33,822 - 10089 mRNA_1721 0.73 0.4
33,824 - 10089 mRNA_1721 0.73 0.2
34,606 + -0.1
34,704 + 0.2
34,710 + -0.8
34,717 + 0.3
34,753 - 1.2
34,868 + 1.4
34,948 - 0.0
35,013 - 1.0
35,040 + 0.2
35,159 - 10090 mRNA_1722 0.11 2.0
35,168 + 10090 mRNA_1722 0.12 -2.1