Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1720

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1719: 10087 - Hypothetical Protein, at 27838 to 28571 10087 mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088 mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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28,359 - 10087 mRNA_1719 0.71 3.5
28,380 - 10087 mRNA_1719 0.74 0.6
28,426 - 10087 mRNA_1719 0.80 2.0
28,545 - 2.3
28,694 - -0.4
28,716 - 0.2
28,757 + -0.1
29,016 - -0.0
29,145 - 0.6
29,145 - -0.6
29,449 + -0.4
29,598 + 10088 mRNA_1720 0.14 0.9
29,598 + 10088 mRNA_1720 0.14 -0.7
29,687 + 10088 mRNA_1720 0.17 -0.7
29,721 - 10088 mRNA_1720 0.18 -1.1
29,917 + 10088 mRNA_1720 0.25 -0.4
29,934 + 10088 mRNA_1720 0.25 -0.4
30,137 + 10088 mRNA_1720 0.32 0.2
30,166 + 10088 mRNA_1720 0.34 -0.5
30,290 - 10088 mRNA_1720 0.38 1.5
30,335 - 10088 mRNA_1720 0.39 -0.2
30,561 + 10088 mRNA_1720 0.47 -0.3
30,612 + 10088 mRNA_1720 0.49 0.3
30,790 + 10088 mRNA_1720 0.55 1.5
30,878 + 10088 mRNA_1720 0.58 -0.7
30,999 - 10088 mRNA_1720 0.63 -0.1
31,332 + 10088 mRNA_1720 0.74 -1.2
31,359 - 10088 mRNA_1720 0.75 1.0
31,450 - 10088 mRNA_1720 0.79 -0.2
31,473 + 10088 mRNA_1720 0.79 1.7
31,607 + 10088 mRNA_1720 0.84 0.0
31,620 - 10088 mRNA_1720 0.85 1.1
31,762 + 10088 mRNA_1720 0.90 -0.4
31,878 - 0.1
32,031 - 3.0
32,173 + 0.7
32,190 - 0.7
32,333 + -0.9
32,336 - 1.2
32,337 - -1.2
32,350 + 0.2
32,350 - 1.8
32,354 + 1.3
32,355 - 0.7
32,356 + 0.1
32,357 + -1.0
32,362 + -1.3
32,547 - 0.2
32,588 + 0.0
32,822 - 10089 mRNA_1721 0.21 0.1
32,823 - 10089 mRNA_1721 0.21 1.9
32,873 - 10089 mRNA_1721 0.23 0.3